Pairwise Alignments

Query, 340 a.a., Oligopeptide transport ATP-binding protein OppD from Xanthobacter sp. DMC5

Subject, 327 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  260 bits (665), Expect = 3e-74
 Identities = 139/319 (43%), Positives = 198/319 (62%), Gaps = 4/319 (1%)

Query: 1   MTRPALLDVKDLTVRFRTPAGRLTAVDRLSFDIAAGETLAIVGESGCGKSVTAMALLRLL 60
           MT P L+ +++L V + T AG + A + +SFD+A GE   + GESGCGKS  A +L+RL 
Sbjct: 1   MTTP-LISIRNLCVDYITDAGDVRACNNVSFDLAPGEVFGLAGESGCGKSTVAFSLMRL- 58

Query: 61  RSPPAEISGSHVRFEGTELLALSERAMRDVRGNRIAMIFQDPLSALNPVRTVADQIIESL 120
             PPA I+G  V F G ++L  S+  M+  R   ++M+FQ  ++ALNPV T+ +Q  + +
Sbjct: 59  HKPPAFITGGEVIFNGEDILKYSDERMQAFRWKEMSMVFQSAMNALNPVLTMEEQFCDVI 118

Query: 121 KRHTGLRGPALHRRAVELLDLVRIPEPQRRADDYPHHFSGGMRQRVMIAIAIAANPRLLI 180
            RHT +      RRA  LL++V I     R +DYPH FSGGMRQR++IAIA+A NP+++I
Sbjct: 119 TRHTNMTREQAKRRAEGLLEIVDIHPS--RLNDYPHQFSGGMRQRLVIAIALALNPKMII 176

Query: 181 ADEPTTALDVTVQAQILKLIVSLQKEFGMSLLLISHDLGVVAETADRVLVMYAGRKVEER 240
            DEPTTALDV VQ +IL+ I +L++EFG S+L I+HDL ++ E +DR+ +MY+G  +E  
Sbjct: 177 MDEPTTALDVVVQREILQKIYALKEEFGFSILFITHDLSLMVEFSDRIGIMYSGELIEVA 236

Query: 241 PVADLFARPLHPYTRALMRARPTPGLRRELLDEIPGIVPSLADLPPGCAFAPRCAHADEA 300
           P   +   P HPYT+ L  + P     +  L  IPG   +L D+P GC F  RC    EA
Sbjct: 237 PSKQILETPYHPYTKGLGSSFPPLTGPKTKLTGIPGNPLNLLDIPQGCRFQARCDRVHEA 296

Query: 301 CARLQPVLEGVGGGGSVAC 319
           C ++  VL  +  G    C
Sbjct: 297 CTKVPTVLRQIEHGRFSNC 315