Pairwise Alignments

Query, 340 a.a., Oligopeptide transport ATP-binding protein OppD from Xanthobacter sp. DMC5

Subject, 546 a.a., oligopeptide ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

 Score =  268 bits (684), Expect = 3e-76
 Identities = 141/262 (53%), Positives = 179/262 (68%)

Query: 1   MTRPALLDVKDLTVRFRTPAGRLTAVDRLSFDIAAGETLAIVGESGCGKSVTAMALLRLL 60
           MT P LL+VKDLTV F +  G   A   +SF + AGETL I+GESG GKSV+A A++ L+
Sbjct: 1   MTGPHLLEVKDLTVDFLSLGGAFRATSGVSFHVDAGETLVILGESGSGKSVSASAIMGLI 60

Query: 61  RSPPAEISGSHVRFEGTELLALSERAMRDVRGNRIAMIFQDPLSALNPVRTVADQIIESL 120
            +PP +I    V + G +L +LSE   RD+ G RIAMIFQDPLS LNPV T+  Q+ E  
Sbjct: 61  DTPPGDICAGSVAYRGRDLSSLSEGERRDLNGRRIAMIFQDPLSHLNPVYTIGWQLEEVF 120

Query: 121 KRHTGLRGPALHRRAVELLDLVRIPEPQRRADDYPHHFSGGMRQRVMIAIAIAANPRLLI 180
             H    G    +RA+E+L  V IPEP++R D YPH FSGG RQR+MI +AIA  P +LI
Sbjct: 121 TVHGVASGAEARQRAIEILGRVGIPEPEKRIDQYPHQFSGGQRQRIMIGMAIALRPEILI 180

Query: 181 ADEPTTALDVTVQAQILKLIVSLQKEFGMSLLLISHDLGVVAETADRVLVMYAGRKVEER 240
           ADEPTTALDV+VQAQIL+L+  LQ E G+++++I+HDL V A  ADRV+VM +GR VEE 
Sbjct: 181 ADEPTTALDVSVQAQILELLKKLQAEDGLAIIMITHDLEVAANMADRVIVMKSGRIVEEG 240

Query: 241 PVADLFARPLHPYTRALMRARP 262
               +F  P H YTR L+ A P
Sbjct: 241 EARAVFENPAHSYTRTLINALP 262



 Score =  189 bits (479), Expect = 2e-52
 Identities = 114/273 (41%), Positives = 159/273 (58%), Gaps = 20/273 (7%)

Query: 3   RPA---LLDVKDLTVRFRTPAG------RLTAVDRLSFDIAAGETLAIVGESGCGKSVTA 53
           RPA   +L+VK++   +   +G      RL AV  LSFD+AAGET+ IVGESG GKS  A
Sbjct: 274 RPAGKPILEVKNIDKFYTLSSGFFAKPARLHAVKNLSFDVAAGETIGIVGESGSGKSTVA 333

Query: 54  MALLRLLRSPPAEISGSHVRFEGTELLALSERAMRDVRGNRIAMIFQDPLSALNPVRTVA 113
             LL L      E SG    F G ++L +  + +   R  ++ M+FQDP S++NP  TV 
Sbjct: 334 RVLLGL-----NEASGGEALFHGRDVLKMDRKQLLAFR-RKVQMVFQDPYSSMNPRMTVF 387

Query: 114 DQIIESLKRHTGLRGPALHR-RAVELLDLVRI-PEPQRRADDYPHHFSGGMRQRVMIAIA 171
           D + E  + H  +      R R  ELL LV + PE  +R   YPH FSGG RQR+ IA A
Sbjct: 388 DIVSEPWRIHKDILEKTRWRDRVTELLGLVGLNPEHAKR---YPHQFSGGQRQRIAIARA 444

Query: 172 IAANPRLLIADEPTTALDVTVQAQILKLIVSLQKEFGMSLLLISHDLGVVAETADRVLVM 231
           +A +P L++ DE  +ALDV+VQ Q++ L+  L+   G++ + I+HDL +V   ADR++VM
Sbjct: 445 LACDPELVVCDEAVSALDVSVQVQVIDLLAELRDRLGLAYIFITHDLPIVRHFADRIIVM 504

Query: 232 YAGRKVEERPVADLFARPLHPYTRALMRARPTP 264
            +G  VE     ++F  P H YTR L+ A P P
Sbjct: 505 KSGEIVEHATTEEIFRNPQHAYTRQLINATPKP 537