Pairwise Alignments

Query, 343 a.a., Holliday junction ATP-dependent DNA helicase RuvB from Xanthobacter sp. DMC5

Subject, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

 Score = 46.6 bits (109), Expect = 2e-09
 Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 8/75 (10%)

Query: 55  VLFVGPPGLGKTTLAQIMSREMGVGFRSTSGPVIAK------AGDLAAILTNLEER--DV 106
           VL  GPPG GKT LA+ ++ E G  F + +GP I          +L  I    EE    +
Sbjct: 214 VLLAGPPGTGKTLLAKAVANEAGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSI 273

Query: 107 LFIDEIHRLSPAVEE 121
           +FIDEI  ++P  +E
Sbjct: 274 IFIDEIDAVAPKRDE 288



 Score = 38.1 bits (87), Expect = 8e-07
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 8/71 (11%)

Query: 55  VLFVGPPGLGKTTLAQIMSREMGVGFRSTSGPVIAK--AGDLAAILTNLEER------DV 106
           VL  GPPG GKT LA+ ++ E    F S  GP I     G+    +  +  +       V
Sbjct: 544 VLLFGPPGTGKTLLAKAVANESEANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTV 603

Query: 107 LFIDEIHRLSP 117
           +F DEI  ++P
Sbjct: 604 IFFDEIDSVAP 614