Pairwise Alignments

Query, 919 a.a., DNA gyrase subunit A from Xanthobacter sp. DMC5

Subject, 761 a.a., DNA topoisomerase IV subunit A from Vibrio cholerae E7946 ATCC 55056

 Score =  386 bits (992), Expect = e-111
 Identities = 254/731 (34%), Positives = 405/731 (55%), Gaps = 72/731 (9%)

Query: 29  SYLDYAMSVIVARALPDVRDGLKPVHRRILFSMHENGYEWNKQYRKSARVVGDVIGKYHP 88
           +YL+Y+M VI+ RALP + DGLKPV RRI+++M E G   + +Y+KSAR VGDV+GKYHP
Sbjct: 22  AYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKSARTVGDVLGKYHP 81

Query: 89  HGDQSVYDALVRMAQTFAMRVPLVDGQGNFGSVDGDAP-AAMRYTEVRLEKVTNTLLDDL 147
           HGD + Y+A+V MAQ F+ R PLVDGQGN+G+ D     AAMRYTE +L K    LL +L
Sbjct: 82  HGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEAKLSKFAEILLSEL 141

Query: 148 DKETVDFQDNYDNSEHEPTVLPAKFPNLLVNGAGGIAVGMATNIPPHNLGEIIDVTVALL 207
            + TVD+Q N+D +  EP +LPA+ P++L+NG  GIAVGMAT+IPPHN+ E+ D T+ L+
Sbjct: 142 GQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPPHNVREVADATIHLI 201

Query: 208 DDPLLEPEALLDLLPGPDFPTGALILGRT-GIRQAYLTGRGSILMRAKVAIEHIRKDREA 266
           D+P      L+  + GPDFPT A I+  T  + + Y +GRGSI MRA        K+   
Sbjct: 202 DNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMRAVWC-----KEGSD 256

Query: 267 LIVTEIPYQVNKATMIEKIAELVRDKRVEGISEIRDESDRDGMRVVIEIKRD--AQADVV 324
           +++T +P+QV+ A ++E+IA  +R K++  + ++RDESD +    ++ + R      D++
Sbjct: 257 IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRIVIVPRSNRVDCDLL 316

Query: 325 LNNLYRLTLLQTSFGVNMVALS-GGKPGILTLHDVLTAFIAFREEVISRRTKFLLRKARD 383
           +N+L+  T L+ SF VN+  +    +P +  L  +L+ +I+FR E +  R ++ L K   
Sbjct: 317 MNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRETVRSRLQYRLDKVLA 376

Query: 384 RAHVLVGLAIAVANIDEVIRLIRTAPDPATARESLMGRDWPAKDMAPLIALIADPRHKLK 443
           R H+L GL IA  N+DEVI +IR   DP   +  LM R                      
Sbjct: 377 RLHILQGLLIAYLNLDEVIEIIRNEDDP---KAVLMAR---------------------- 411

Query: 444 EDGTYRLSEVQARAILDLRLQRLTALGRDEIAEELDKLAAEIADYLEILASRPRMRAIIR 503
               + L+++QA AILD +L+ L  L   +I  E D+L  E     E+L S  R+  +++
Sbjct: 412 ----FDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLK 467

Query: 504 DELLAIKAEFGTPRRTEIV--EGFGDLEDEDLIQREEMVVTVSHAGYIKRVPLSTYRAQR 561
            E+ A   +FG  RR+ +V  E    L + DL+  E + V +S  G+I+        A+ 
Sbjct: 468 KEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITVVLSEKGWIR-------HAKG 520

Query: 562 RGGKGRSAMQTRDEDFVTRLFVASTHAPVLFFSSKGQVYKMKVWRLPLAAPQARGKALIN 621
                +S      ++++T      ++   +F  S G+ Y ++   LP A  + +G+ +  
Sbjct: 521 HDVDCQSLNYKAGDNYLTHA-CGKSNQQAVFLGSDGRSYSLESHTLPSA--RGQGEPITG 577

Query: 622 ILPLEQDERITSVVLLPEDEGENQRLQIMFATTG-GTVRRNALTDFQQVNRNGKIAMKLA 680
            L + +   I  VV+     GE  +L ++ +  G G V +    D    NR+GK  + L 
Sbjct: 578 RLNVAEGTTIRQVVM-----GEEDQLWLVGSDAGYGFVCKG--DDLLSKNRSGKALINLP 630

Query: 681 EG------EAIADVGLCTEEDDVLLTTAAGACIRFPVTEV-RLFKGRDS--VGVRGIRLE 731
           E       + IAD+    + D++L  T  G  + FP+ ++ +L KG+ +  + +   + +
Sbjct: 631 ENSEVMTPQVIADL----DNDEILAITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAK 686

Query: 732 ESDSVISMAII 742
             + V+S  ++
Sbjct: 687 TREEVLSNLMV 697



 Score = 32.7 bits (73), Expect = 9e-05
 Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 5/94 (5%)

Query: 788 RYAEMGAKEQFILTVSENGYGKRTSSYEYRVTGRGGKGIVAMAVNER--NGRLVASFPVE 845
           R   MG ++Q  L  S+ GYG      +     R GK ++ +  N      +++A     
Sbjct: 588 RQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADL--- 644

Query: 846 DADQIMLVTDGGQLIRCPVDGIRIVGRASQGVIV 879
           D D+I+ +T+ G+++  P+  +  + +     I+
Sbjct: 645 DNDEILAITNQGRMLLFPIKDLPQLSKGKGNKII 678