Pairwise Alignments

Query, 1045 a.a., UvrABC system protein A from Xanthobacter sp. DMC5

Subject, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

 Score = 1162 bits (3005), Expect = 0.0
 Identities = 588/944 (62%), Positives = 729/944 (77%), Gaps = 11/944 (1%)

Query: 28  LSVRGAREHNLKNVDLEIPRDSLVVFTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 87
           + VRGAR HNLKN++L IPRD L+V TGLSGSGKSSLAFDT+YAEGQRRYVESLSAYARQ
Sbjct: 4   IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63

Query: 88  FLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLWARTGVPYSPAT 147
           FL +M+KPDVD I+GLSPAISIEQK+TS NPRSTVGT+TE+YDY+RLL+AR G P  P  
Sbjct: 64  FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRCPEH 123

Query: 148 GLPIESQTVSQMVDRTLALPEGTRLYLLAPVVRGRKGEYRKELADWMKKGFQRVKVNGAF 207
            +P+++QT+SQMVD+ L LPEG+++ LLA +V+ RKGE+ K L +   +GF R +++G  
Sbjct: 124 QVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARIDGET 183

Query: 208 HEIAEAPALDKKFKHDIDVVVDRIVVRADLAQRLADSFETALGLADGIAVAEFADEKDEA 267
            ++ + P L+   KH I+V+VDR  VR+DL QRLA+SFETAL L+ GI V    +     
Sbjct: 184 CDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGGIVVVAPME----- 238

Query: 268 GAPRRIIFSEKFACPVSGFTIPEIEPRLFSFNNPFGACPACDGLGVEQTIDPDLVVPDKA 327
           G     IFS  FACP  G+++ E+EPRLFSFNNP GACP CDGLGV+Q  DPD V+ D  
Sbjct: 239 GDGEEQIFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQDAN 298

Query: 328 RSLKQGAIAPWAKSTSPYYGQTLDALAKHYHFKLNVPFADLPEQAREVLLFGSGSEKITF 387
            SL QGAI  W +    YY Q L ALA+HY F ++ PF  L ++ +E++L GSG  +I F
Sbjct: 299 LSLAQGAIRGWDQKNF-YYFQMLTALAEHYDFDVHTPFNKLSKKIQEIILHGSGRTEIEF 357

Query: 388 HYDDGMRAYETSK-TFEGVVRNLDRRWKETDSDWAREEISKYFSTVPCKVCNGYRLKPEA 446
            Y +        K  FEG++ NL+RR+++T+S+  REE++KY S  PC  C+G RLK EA
Sbjct: 358 KYINDRGDIRLKKHPFEGILHNLERRYRDTESNSVREELAKYISNKPCSSCDGTRLKIEA 417

Query: 447 LAVKIAGRHIGEIGELSVRAAAGWFESLPAQLTDKQNEIAGRILKEIRERLRFLLDVGLE 506
             V I    +  I ELS+  A  +F+ L  +L  ++ +IA +++KEI +RL+FL++VGL 
Sbjct: 418 RNVFINDTALPTIVELSIADALTFFQEL--KLEGQRAQIAEKVMKEINDRLQFLVNVGLN 475

Query: 507 YLTLARSSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNERLLGTLKHLRD 566
           YL L+RS+ TLSGGE+QRIRLASQIG+GL GV+YVLDEPSIGLHQRDNERLL TL HLR+
Sbjct: 476 YLNLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLTHLRN 535

Query: 567 LGNTVIVVEHDEDAILAADHVVDVGPGAGIHGGEIVAQGTPAEILANPASLTGRYLTGEL 626
           LGNTV+VVEHDEDAI  ADHV+D+GPGAG+HGG +VA+G   EI+ANP SLTG+YL+G  
Sbjct: 536 LGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIANPNSLTGQYLSGVK 595

Query: 627 SVGVPARRKP-NPKRMLKLTGARGNNLKNVTAEIPLGLFTCITGVSGGGKSTLLIDTLYK 685
            + VP +R P + K+ ++L GA GNNLKNV   IP+GLFTC+TGVSG GKSTL+ DT +K
Sbjct: 596 KIAVPEQRTPKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFK 655

Query: 686 AVARRLNGASEA-PAPFDKLEGLEHLDKVIDIDQSPIGRTPRSNPATYTGAFTPIREWFA 744
                LNGA+ A PAP+  ++GLEH DKVIDIDQSPIGRTPRSNPATYTG FTPIRE FA
Sbjct: 656 IAHTALNGATTATPAPYRSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFA 715

Query: 745 GLPEAKARGYGAGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCDVCKGKRYNRETL 804
           G  E+++RGY  GRFSFNV+GGRCEACQGDGVIK+EMHFLPDVYV CDVCKGKRYNRETL
Sbjct: 716 GTQESRSRGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETL 775

Query: 805 EVTFKNKSIADVLDMTVEEGAQFFKAVPSVREKLETLHRVGLDYVKVGQQATTLSGGEAQ 864
           EV +K K+I +VLDMTVE+  +FF  VP +  KL+TL  VGL Y+++GQ ATTLSGGEAQ
Sbjct: 776 EVRYKGKTIDEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQ 835

Query: 865 RVKLSKELSRRATGRTLYILDEPTTGLHFHDVKKLLEVLHELVEQGNSVVVIEHNLEVIK 924
           RVKL++ELS+R TG+TLYILDEPTTGLHFHD+++LL VLH L + GN+VVVIEHNL+VIK
Sbjct: 836 RVKLARELSKRDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLDVIK 895

Query: 925 TADWILDLGPEGGDGGGEIVVAGTPETVAASKRSHTGRFLAEVL 968
           TADWI+DLGPEGG GGG I+  GTPE VA  + SHT RFL  +L
Sbjct: 896 TADWIIDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFLKPLL 939



 Score = 62.8 bits (151), Expect = 1e-13
 Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 16  PVREVPRRDARTLSVRGAREHNLKNVDLEIPRDSLVVFTGLSGSGKSSLAFDTIYAEGQR 75
           P +  P+   +T+ ++GA  +NLKNVDL IP       TG+SGSGKS+L  DT +     
Sbjct: 600 PEQRTPKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHT 659

Query: 76  RYVESLSAYARQFLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLL 135
               + +A    +  +      D++      I I+Q    + PRS   T T I+  +R L
Sbjct: 660 ALNGATTATPAPYRSIQGLEHFDKV------IDIDQSPIGRTPRSNPATYTGIFTPIREL 713

Query: 136 WART 139
           +A T
Sbjct: 714 FAGT 717