Pairwise Alignments
Query, 468 a.a., Tol-Pal system protein TolB from Xanthobacter sp. DMC5
Subject, 1084 a.a., protease from Vibrio cholerae E7946 ATCC 55056
Score = 48.1 bits (113), Expect = 1e-09
Identities = 23/103 (22%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 288 APDGQKVIMSLQQGGNSNIFVMDLRSRATTRLTDTAAIDTAPCYSPDGRQICFESDRGGT 347
+PDGQK+ + I+++ + LT++ P +SPD + I F +DR G
Sbjct: 47 SPDGQKIAFTYA----GQIWLVPAQGGDAVALTESGVYSETPIWSPDSQSIAFTADRYGL 102
Query: 348 SQIYVMNADGSGAKRISFGNARYSTPVWSPKGDWIAYTRQAEG 390
+++++ G ++R+++ A+ +S G + ++ + G
Sbjct: 103 GDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLG 145
Score = 47.8 bits (112), Expect = 2e-09
Identities = 46/149 (30%), Positives = 64/149 (42%), Gaps = 17/149 (11%)
Query: 332 SPDGRQICFESDRGGTSQIYVMNADGSGAKRISFGNARYSTPVWSPKGDWIAYTRQAEGR 391
SPDG++I F QI+++ A G A ++ TP+WSP IA+T G
Sbjct: 47 SPDGQKIAFTY----AGQIWLVPAQGGDAVALTESGVYSETPIWSPDSQSIAFTADRYGL 102
Query: 392 FAIGVMRTDGSGERVLT-EGYHNEGPTFCPNGRVLMF-FRDPG----------GASGPSL 439
+ ++ G R LT G + F +G+ L F R G G+ L
Sbjct: 103 GDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLGDDKANANVKQGSFMAQL 162
Query: 440 YTVDVTGYNEQRLPTPSYGSDPAWSPLRS 468
Y+V G EQR+ P SD A SP S
Sbjct: 163 YSVPAAGGREQRV-LPIAISDLAISPSHS 190
Score = 47.8 bits (112), Expect = 2e-09
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 244 SPTSQEITYMSYGQGDPKVFLLNIETGQREIVGNFPGMSFSPRFAPDGQKVIMSLQQGGN 303
SP Q+I + GQ ++L+ + G + S +P ++PD Q + + + G
Sbjct: 47 SPDGQKIAFTYAGQ----IWLVPAQGGDAVALTESGVYSETPIWSPDSQSIAFTADRYGL 102
Query: 304 SNIFVMDLRSRATTRLTDTAAIDTAPCYSPDGRQICFESDRGGTSQIYVMNADGSGAKRI 363
++F++ ++ + RLT A D +S DG+Q+ F S R G + + K+
Sbjct: 103 GDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLGDDKA------NANVKQG 156
Query: 364 SFGNARYSTP 373
SF YS P
Sbjct: 157 SFMAQLYSVP 166
Score = 42.4 bits (98), Expect = 8e-08
Identities = 53/217 (24%), Positives = 84/217 (38%), Gaps = 31/217 (14%)
Query: 220 IMDQDGANVSYLTRGDSLVLTPRFSPTSQEITYMS--YGQGDPKVFLLNIETGQREIVGN 277
++ G + LT TP +SP SQ I + + YG GD VF+L+I+ G+ +
Sbjct: 63 LVPAQGGDAVALTESGVYSETPIWSPDSQSIAFTADRYGLGD--VFILSIQGGESRRLTY 120
Query: 278 FPGMSFSPRFAPDGQKVIMSLQQGG----NSNI----FVMDLRSRATT-----RLTDTAA 324
F+ DGQ++ S ++ G N+N+ F+ L S R+ A
Sbjct: 121 HGAKDIPYAFSADGQQLYFSSRRLGDDKANANVKQGSFMAQLYSVPAAGGREQRVLPIAI 180
Query: 325 IDTAPCYSPDGRQICFESD------------RGGTSQIYVMNADGSGAKRISFGNARYST 372
D A SP I + + T I+ + +I+
Sbjct: 181 SDLA--ISPSHSDILYTNQPSDEQPWRKGALSDATRDIWQWSPLTGKHTQITTFRGEDRN 238
Query: 373 PVWSPKGDWIAYTRQAEGRFAIGVMRTDGSGERVLTE 409
PVWS G + Y + G F + R DGS +T+
Sbjct: 239 PVWSADGSSMYYLSEQAGSFNVWQQRFDGSEPVQITD 275
Score = 40.4 bits (93), Expect = 3e-07
Identities = 45/235 (19%), Positives = 101/235 (42%), Gaps = 29/235 (12%)
Query: 217 RLAIMDQDGANVSYLTRGDSLVLTPRFSPTSQEITYMSYGQGDPKVFLLNIETGQREIVG 276
R + M NV++ +V+ +P + E+ ++ G V+++++ +G + +
Sbjct: 318 RRSAMPDGRHNVNFNLEATEMVV----APNAAEVAIVARGD----VYVVSLLSGLTQRIT 369
Query: 277 NFPGMSFSPRFAPDGQKVIMSLQQGGNSNIFVMDLRSRATTRLTDTAAID---------- 326
+ P F+ DG ++I + ++ G+ N++ + + + I+
Sbjct: 370 DTPEAERDVSFSSDGYRLIYASEREGSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQDV 429
Query: 327 TAPCYSPDGRQICFESDRGGTSQIYVMNADGSGAKRISFGNARYS------TPVWSPKGD 380
P YSP+ ++I + +R T ++Y + D + + +A YS + WSP +
Sbjct: 430 IQPLYSPNLKRIVYRENR-NTLKVYDIEQDKT--YTLLDAHALYSYFDKDLSYQWSPDSE 486
Query: 381 WIAYTRQAEGRFAIGVMRTDGSGE--RVLTEGYHNEGPTFCPNGRVLMFFRDPGG 433
+I +A I +++ DGS + G+ P F +G+ + + D G
Sbjct: 487 YIVTRDRAMSNGDIQLLKFDGSEAPINLSQSGFSEFAPQFSADGQWVYWLTDAKG 541
Score = 27.7 bits (60), Expect = 0.002
Identities = 24/128 (18%), Positives = 52/128 (40%), Gaps = 6/128 (4%)
Query: 194 EKGYFDTRIVFVDESGPKERRIKRLAIMDQDGANVSYLTRGDSLVLTPRFSPTSQEITYM 253
++G F ++ V +G +E+R+ +AI D ++ S +L Q
Sbjct: 154 KQGSFMAQLYSVPAAGGREQRVLPIAISDLA------ISPSHSDILYTNQPSDEQPWRKG 207
Query: 254 SYGQGDPKVFLLNIETGQREIVGNFPGMSFSPRFAPDGQKVIMSLQQGGNSNIFVMDLRS 313
+ ++ + TG+ + F G +P ++ DG + +Q G+ N++
Sbjct: 208 ALSDATRDIWQWSPLTGKHTQITTFRGEDRNPVWSADGSSMYYLSEQAGSFNVWQQRFDG 267
Query: 314 RATTRLTD 321
++TD
Sbjct: 268 SEPVQITD 275