Pairwise Alignments

Query, 412 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 311 a.a., murein hydrolase activator NlpD from Vibrio cholerae E7946 ATCC 55056

 Score =  125 bits (314), Expect = 2e-33
 Identities = 99/316 (31%), Positives = 143/316 (45%), Gaps = 48/316 (15%)

Query: 115 APAAAPAA----------RGPTAGTHVVVA-GETLGSISRMYNVSVASLTIANNIPAGGT 163
           AP  AP +          RG   G++  V  G+TL  I+ + +  V  L   N++    T
Sbjct: 22  APTPAPVSGLGKDYNKVERGSYRGSYYEVKKGDTLYFIAYLTDKDVNDLISYNDLAPPYT 81

Query: 164 VRTGQTLII------PPGGNGASQAKAAQAAAQTTAAAKPPQLAAAAPVASTLQVPGSTK 217
           +  GQ + +      PP   G   A     A+ T+A+    + A  A VA T+    +TK
Sbjct: 82  IHPGQKIKLWLPNYTPPAYGGTGGAATVAVASSTSASVA--KAATTATVAQTVSKSSNTK 139

Query: 218 PATVAAAPAPALTAAPAAKPTPATAA---AKPAGSAPTQA-VAKSSAPEPKVETAAKVTP 273
                +  +  LT     K    T      +P G       VAK+   + K+        
Sbjct: 140 NVQNGSTNSQNLTKKDPVKTVDQTKTKEYVEPVGKQNVNVNVAKAKPSDEKIA------- 192

Query: 274 VEDADDGPRASGSGPQFRAPVRGRVIASFGPKPGGAHNDGVNFAVPEGTAVRAAEDGTVA 333
                          ++  P +GRVI +F    G   N G++ A   G AV A  DGTV 
Sbjct: 193 ---------------KWLWPTKGRVIKNFSA--GDQGNKGIDIAGQRGQAVVATADGTVV 235

Query: 334 YAGNELKGYGNLVLIKHADGYVTAYANNSELTVKRGDTVRRGQIVAKAGQSGNVGSPQLH 393
           Y+GN L+GYGNL++IKH + Y++AYA+N +L  K G TV+ GQ +A  G SG   S +LH
Sbjct: 236 YSGNALRGYGNLIIIKHNEHYLSAYAHNDQLLAKEGQTVQAGQKIATMGSSG-TNSVRLH 294

Query: 394 FEIRKGSTPVDPSRYV 409
           FEIR     V+P RY+
Sbjct: 295 FEIRYQGKSVNPKRYL 310