Pairwise Alignments

Query, 412 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 590 a.a., Peptidoglycan-binding LysM from Synechococcus elongatus PCC 7942

 Score =  118 bits (295), Expect = 5e-31
 Identities = 97/354 (27%), Positives = 151/354 (42%), Gaps = 38/354 (10%)

Query: 82  PPPGQAAAPGYQPSSYASTGPGQPLYGAPGYAAAPAAAPAAR-GPTAGTHVVVAGETLGS 140
           P P  A AP  QP S A           P   A    +PA    P    + V  G++L  
Sbjct: 246 PRPVTAEAPVIQPRSLA-----------PAAVAIRPLSPATELSPEPQAYTVQPGDSLSR 294

Query: 141 ISRMYNVSVASLTIANNIPAGGTVRTGQTLIIPPGGNGASQAKAA------QAAAQTTAA 194
           I+  + + +  L   N +     +  GQ L IPP G       A       Q   + T++
Sbjct: 295 IATRFGLDLQDLLQVNRLSNPNLIFVGQRLTIPPAGQARLAPVATLPPLLRQQVTEDTSS 354

Query: 195 AKPPQLAAAAPVASTLQVPGSTKPATVAAAP--------APALTAAPAAKPT-PATAAAK 245
                L +      T++   S  P+ + +           P+L+++ +  P  P+    K
Sbjct: 355 RIAANLGSGLNAELTIESLSSPPPSNLKSLDITAQTSFSGPSLSSSRSLTPALPSATPFK 414

Query: 246 PAGSAPTQAVAKSSAPEPKVETAAKVTPVEDADDGPRAS------GSGPQFRA---PVRG 296
           P    P +        E      A +     A + P  +      G G +F     P RG
Sbjct: 415 PQQPEPDKVAVAPLGSENYEPLLASLLKTAVAPELPSLNSDELLPGGGDRFAGYIWPARG 474

Query: 297 RVIASFGPKPGGAHNDGVNFAVPEGTAVRAAEDGTVAYAGNELKGYGNLVLIKHADGYVT 356
            + + +G + G  H  G++ A P GT + AA  G V  AG    GYGNLV I+H +G +T
Sbjct: 475 ILSSGYGWRWGRMHR-GIDIAGPVGTPILAAAPGVVVTAGWNSGGYGNLVEIQHPNGSLT 533

Query: 357 AYANNSELTVKRGDTVRRGQIVAKAGQSGNVGSPQLHFEIR-KGSTPVDPSRYV 409
            YA+N+ + V+ G+ V++GQIVA+ G +G    P LHFE+  +G+  V+P  Y+
Sbjct: 534 LYAHNNRILVRPGERVQQGQIVAEMGSTGRSTGPHLHFEVHPRGNGAVNPIAYL 587



 Score = 52.4 bits (124), Expect = 4e-11
 Identities = 49/161 (30%), Positives = 64/161 (39%), Gaps = 18/161 (11%)

Query: 117 AAAPAARGPTAGTHVVVAGETLGSISRMYNVSVASLTIANNIPAGGTVRTGQTLIIPPGG 176
           A APA    +   H V  GETL SI+R + ++VA L   N +  G T+R  Q L + P  
Sbjct: 133 AEAPARTLSSQEIHRVQPGETLWSIARAHGLTVAQLLTYNQLTEGTTLRVDQVLNLQP-- 190

Query: 177 NGASQAKAAQAAAQTTAAAKPPQLAAA------APVASTLQVP-GSTKPATVAAAPAPAL 229
                A  A AA       +   LA A      +P A     P  S  P      P P  
Sbjct: 191 KAVEPAPIATAAPLVQDPVQQHLLALAGDSRLPSPAAERSVEPISSVPPQATPTLPRPVT 250

Query: 230 TAAPAAKP---TPATAAAKPAGSAPTQAVAKSSAPEPKVET 267
             AP  +P    PA  A +P       + A   +PEP+  T
Sbjct: 251 AEAPVIQPRSLAPAAVAIRPL------SPATELSPEPQAYT 285