Pairwise Alignments

Query, 610 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 611 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  312 bits (799), Expect = 3e-89
 Identities = 184/562 (32%), Positives = 287/562 (51%), Gaps = 6/562 (1%)

Query: 46  GKPALPPGFTSLAYANSNAPKGGRLTLSLLGTFDSLNPFIVKGTSPGVLRGTVTESLMAR 105
           G+   P  FT   Y N  APK G++T   LGT+D+ N F  +G +       + + LM  
Sbjct: 40  GEAKYPENFTHFDYVNPQAPKYGKVTFGELGTYDNFNRFASRGVA-AANTAELYDPLMFS 98

Query: 106 SLDEPFTLYPLIARTVSTDEKRSFVEFALDPAARFSDGSALTSADVLFSFALMRDMGRPN 165
             DE  + YPLIA  +   +  +++E  L+P ARF DG  +T+ DV FSF      G P 
Sbjct: 99  PADEIDSYYPLIASKIRYSDDFTWLEIDLNPNARFHDGKPITAQDVEFSFEKFMAEGVPQ 158

Query: 166 HRLYYGKITKAEAPDAHTVRFTFAEPDPE-LPLIMGLMPVFSEQATDRTRFEETTLTPLL 224
           +R+YY  +   +A    TVR    +P+ E L  +     V  +         E    P +
Sbjct: 159 YRVYYQDVKSVKAIAERTVRIEMKQPNREQLFSLAQSTRVLPKHYWQYKNLAEPLNEPPV 218

Query: 225 GSGPYRVTNVNAGAALTLERNPDYWGRNVAFNRGLYNFDRLDTVYFRDANSEFEAFRKGL 284
           GSG Y++ +   G ++T + NPDYW +++  N G  NF ++   Y+RD     EAF+ G 
Sbjct: 219 GSGAYQIVDFKPGQSVTYKLNPDYWAKDLPVNVGRNNFAQIQYDYYRDDTVMLEAFKAGE 278

Query: 285 IDARFESDPGRWETAYDFPAVRSGEVVKETIPTGIPKPYSAFVFNTRRPLLADIRVRQAL 344
            D R E+    W T+Y       G + KE I    P     F+FNT+RP+  D+RVR+AL
Sbjct: 279 FDLREENQAKFWATSYTGRNFDQGLIKKEEIAHQAPASTQGFIFNTQRPVFQDVRVREAL 338

Query: 345 IELFDFEWLDRSFYHGLYRRTGSFFEGSALSSIGRPADARERALLAPFPGSVVPDVLAGT 404
               DFEW++++ ++  Y+RT S+F+ +   + G P +A E A+L P+   +   V   T
Sbjct: 339 NYALDFEWMNKNLFYDQYQRTRSYFQNTEYEAQGLP-NAAELAVLTPYKEQLPARVFTET 397

Query: 405 YRPPVSDGTGRDRIRLKAALDLLEQAGFVLRKGALVDAGNGRPFALELMVVTRDQERLAL 464
           Y+P V+DG+GR R +++ A  LL++AG+ L+   + +   G P + EL++ +   ER+A+
Sbjct: 398 YQPSVTDGSGRIRTQMREAFALLKEAGWELKNKVMTNVKTGEPLSFELLIYSPTTERIAI 457

Query: 465 AWQAQLKRAGITLNVRSVDAVQFDTRRQAYDFDMMPYAWSQSLSPGNEQAFYFGAAAADT 524
             Q  L+  GI + +R+VD  Q+  R +  DFDM+ + +S +  P       + +   D+
Sbjct: 458 PLQKNLQLMGIEMKIRTVDTTQYTKRLRDRDFDMISHGFSANPYPSPNLLIVWNSNYMDS 517

Query: 525 PGSRNYMGAKAPAIDATIAALI-AARDEEAYVAAARALDRVLISGAYAVPLFHTPGQWLA 583
             S N  GA  P IDA    +  + +D E   A   ALDRVL    Y +P +H     +A
Sbjct: 518 --SYNSAGANHPVIDALTEQIAKSQQDTEKLRALGSALDRVLQWNFYIIPQWHLSMYRVA 575

Query: 584 RWTRIARPERASLYGTLPETWW 605
            W + +RP     Y    +TWW
Sbjct: 576 MWDKFSRPSVLPKYSLGLDTWW 597