Pairwise Alignments

Query, 1155 a.a., DNA polymerase III subunit alpha from Xanthobacter sp. DMC5

Subject, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

 Score =  806 bits (2081), Expect = 0.0
 Identities = 481/1159 (41%), Positives = 683/1159 (58%), Gaps = 47/1159 (4%)

Query: 3    TDPGFIHLHVHSSYSLLEGALSVGKLADLAKADYQPAIALTDTGNLFGALEFSEKMSGSG 62
            +DP FIHL +HS +S+++G   V  L     A   PA+ALTD  NL G ++F       G
Sbjct: 2    SDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCG 61

Query: 63   IQPIPGVSLALDLPEPAGPRGGLRPRKPRVVLLAKDDAGWRNLMRLVSRSFLETASEDEP 122
            ++PI G    L   E             ++ LLAK++ G++NL  L+S+++L    + +P
Sbjct: 62   VKPIIGADFTLQSEE-------FGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQP 114

Query: 123  RILPEWLAEANDGLICLTGGPSGPLDRAIVGGHPEMAADRLDLLTSLFGDRLYVEVQRHG 182
             I   WL E  +GLI L+GG SG + RA++ G+ +     ++   + F D  Y+E+ R G
Sbjct: 115  VIDKAWLVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTG 174

Query: 183  ADPERLAEPALLDLAYTKGVPLVAANEPFFAAKSDYEAHDGLLAIAEGRLLSEGDR-RRL 241
               E       LD+A    +P+VA NE  F  +  +EAH+  +AI +G  L +  R +  
Sbjct: 175  RADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNY 234

Query: 242  TAEHRFKTRAEMLELFADLPEATANTVEIAKRCAYRVRTVKPILPRFTTADEKAEGSDPL 301
            + +   ++ AEM ELFAD+PEA AN+VEIAKRC   VR  +  LP F T     E     
Sbjct: 235  SPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGMAIEDF--- 291

Query: 302  EAEAAELKRQAEEGLAARLAKHGPAPGLD---EAAYHDRLAYEVSVITKMKFPGYFLIVS 358
                  L  ++ EGL  RL    P P +       Y +RL  E+ VI +M FPGYFLIV 
Sbjct: 292  ------LVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVM 345

Query: 359  DFIKWAKAHDIPVGPGRGSGAGSLVAYSLQITDLDPLRFGLLFERFLNPDRVSMPDFDVD 418
            +FI+W+K +DIPVGPGRGSGAGSLVAY+L+ITDLDPL + LLFERFLNP+RVSMPDFDVD
Sbjct: 346  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 419  FCQERRDEVIRYVQERYGRAQVAQIITFGTLQARGVLRDVGRVLEMPYGQVDKLCKLVPQ 478
            FC ++RD+VI +V E YGR  V+QIITFGT+ A+ V+RDVGRVL  P+G VD++ KLVP 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 479  NPANPVTLKQAIEDEPRLQAARDQEEVVKRAFDIAVKLEGLNRHASTHAAGIVIGDRQLH 538
            +P   +TL++A   EP LQ   D +E VK   D    LEG  R+A  HA G+VI    + 
Sbjct: 466  DPG--MTLEKAFIAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAIT 523

Query: 539  ELVPLYRDPKSDMPVTQYNMKWVEQAGLVKFDFLGLKTLTTIEKAVKLVHQR-----GIE 593
            +  P+Y D + + PVTQ++   VE AGLVKFDFLGL+TLT I+ A+ LV+ R        
Sbjct: 524  DFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPP 583

Query: 594  LDISKIPLDDAKTYHMLGKGETVGVFQVESAGMRRALVDMKADRIEDIVALVALYRPGPM 653
            + I  IPLDDA+++  L   +T  VFQ+ES GM+  +  ++ D  EDI+ALVAL+RPGP+
Sbjct: 584  VRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPL 643

Query: 654  AN--IPVYCDCKHGR---ATPD--YLHPMLEPYLKETFGVIIYQEQVMQIAQAMAGYSLG 706
             +  +  + D KHGR   + PD  + H  L+  L+ T+G+I+YQEQVMQIAQ ++GY+LG
Sbjct: 644  QSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLG 703

Query: 707  EADLLRRAMGKKIRAEMEKQRERFVSGAAGRGIEKAQADTIFDLLAKFADYGFNKSHAAA 766
             AD+LRRAMGKK   EM KQR  F  GA   G++   A  IFDL+ KFA YGFNKSH+AA
Sbjct: 704  GADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAA 763

Query: 767  YALVAYQTAWLKANYPTEFLAASMTLDKGNTDKLAEFRQEAQRLGIEVVPPNINLSAREF 826
            YALV+YQT WLK +YP EF+AA MT D  NT+K+     E + +G+ V+PP+IN     F
Sbjct: 764  YALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRF 823

Query: 827  GVKD-GKIIYAMAAIKGVGEAAVEALVAARGDRP-FRSFADFATRLPVKLVNKRTLESLM 884
             V D G I+Y + AIKGVGE  +EA++ AR     F+   DF  R+ +K VNKR +E L+
Sbjct: 824  NVDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLI 883

Query: 885  AAGCFDVLEKNRARAFAAIEPIVAEAQRVEANAQSGQNDMFG--SGPAAAASLPIPEASP 942
             AG  D L  +RA   A+++  V  A +       GQ DMFG  +           +   
Sbjct: 884  LAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPE 943

Query: 943  WLPSERLQKEYDSIGFFLTGHPLDDYAEALKKMRVQSFADFSRAVRSGAAAGRLAATVVS 1002
            W    RL+ E +++G +LTGHP+D+Y + L K       + +   R  +    +A  V++
Sbjct: 944  WPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLT--VAGLVIA 1001

Query: 1003 KQERRTKSGTRMGIVGLSDPSGHYEAVIFSEGLAHYRDLLEPGTPLLMMVAAEMNGEDVR 1062
             +   TK GTR+G++ L D SG  E +++SE L  Y + LE     +++V+ +++ +D  
Sbjct: 1002 ARVMTTKRGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDK--ILVVSGQVSFDDFN 1059

Query: 1063 --VRINSCEKLDPVTA--KHQKGLRIFLRSPEPIEGIARRLSDGKSGEKGAGEVSLILLV 1118
              +++++ E +D  +A  K  +GL I +   +  +    R S      + AG V + +  
Sbjct: 1060 GGLKMSAREVMDLGSAREKFARGLSISILQSQIDQQFFERFSHILEPHR-AGTVPVNVYY 1118

Query: 1119 DDAHAEVEVSLPGKYSVSP 1137
                A   ++L  ++ V+P
Sbjct: 1119 QRPDARARLTLGTEWRVTP 1137