Pairwise Alignments

Query, 165 a.a., Transcription antitermination protein NusB from Xanthobacter sp. DMC5

Subject, 156 a.a., N utilization substance protein B from Vibrio cholerae E7946 ATCC 55056

 Score = 53.9 bits (128), Expect = 1e-12
 Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 9/153 (5%)

Query: 13  APQKPMKKSAARLGAVQALYQMDMAATPLNDVLAEFESHWLGQEVE------GIEFPEAD 66
           A  KP  +  AR  A+QA+Y   +    +  +  +F +     E E       +  PE D
Sbjct: 3   ASVKPAARRNARQFALQAIYSWQITKENVATIEEQFLTSGKYDEEEHRAAEPALAAPETD 62

Query: 67  RRLFRSVVEGVLNAQRQIDPLVDGTLSKGWPLKRVEAVLRAVLRAGAFELMAK-DPPARV 125
              FR ++ GV+    ++D  +   +S+  P++ ++ +  A+LR   +E+  + D P +V
Sbjct: 63  VSYFRDLLAGVVLNHNELDSKLRPFVSR--PMQDLDMMELALLRLAMYEMTRREDVPYKV 120

Query: 126 VITEYVNVAGAFLDRDETGMVNAVLDALAHELR 158
           VI E + +A  F   D    VN VLD  A  +R
Sbjct: 121 VINEAIELAKVFAAEDSHKFVNGVLDKAAPHVR 153