Pairwise Alignments

Query, 369 a.a., Protein-export membrane protein SecF from Xanthobacter sp. DMC5

Subject, 388 a.a., preprotein translocase subunit SecD from Methanococcus maripaludis S2

 Score = 58.9 bits (141), Expect = 2e-13
 Identities = 54/235 (22%), Positives = 101/235 (42%), Gaps = 23/235 (9%)

Query: 49  KGGTLIEAQTSQQQADIGALREHLTDLDVGDVQIQEFGSPRDVLIRIGAFGTT---DEAQ 105
           KGG  +E    ++     A+   L   D+ D  I +      V+   G+  T    DEA 
Sbjct: 154 KGGYPVELYMDEK-----AISAPLLSADLADGNIHQ----NQVITVAGSNPTEEDIDEAW 204

Query: 106 QAILAKVQGVLGTDYSVRRVETVGPSVSGELVRQSILALVLGAVAVLGYLWFRFE-WQFA 164
               A   G L     +  + +V P++  E ++ S++A +   +AV   + FR++  +  
Sbjct: 205 VIYTALKSGSLPVKVHIEYISSVSPTLGSEFIKGSVIAGIFAFIAVAAVISFRYKNPKIV 264

Query: 165 VGAIVTTMHDIFVTLMIYSAFGIDFDLTSIAAILTIMGYSLNDTVVVYDR-IREMLRRYK 223
           +  ++T   ++ + L   S      DL SIA I+  +G  ++  +V+ D  I    ++  
Sbjct: 265 LPILITGFSEVLLILGFASLIDWKLDLASIAGIIAAVGTGVDHQIVITDETISGEAKKVT 324

Query: 224 KLPLPELLDIAVNATFSRTIIVSTTTFFATLALYFFGGEVLRGFSLAMTVGVVIG 278
           K         ++   F      + TT  A L L+  G  +L+GF++    GV++G
Sbjct: 325 K---------SIKRAFFIIFGAAATTIAAMLPLFVMGIGMLKGFAITTIAGVLMG 370



 Score = 32.0 bits (71), Expect = 3e-05
 Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 18/119 (15%)

Query: 31  IVACLLFAIHGFNLGIDFKGGTLIEAQTSQQ--QADIGALREHLTDL----DVGDVQIQE 84
           + + LL A  G + G+D  GG+ I  QT  +  ++++  + E LT       + DV+I  
Sbjct: 17  LASLLLIAFKGISFGVDLSGGSTIVLQTESELSESEMTTVNEILTSRLNTNGLSDVRIYP 76

Query: 85  FGSPRDVLIRIGAFGTTDEAQQAILAKVQGVLG---------TDYSVRRVETVGPSVSG 134
            GS  +++I I      +  Q+ +    QGV           T   V  VE  G + SG
Sbjct: 77  RGSD-EIVIEIPESADLERIQKILTQ--QGVFTAVIDNQTAYTGQDVSYVEEPGMTASG 132