Pairwise Alignments

Query, 535 a.a., Protein translocase subunit SecD from Xanthobacter sp. DMC5

Subject, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

 Score =  277 bits (708), Expect = 9e-79
 Identities = 188/502 (37%), Positives = 288/502 (57%), Gaps = 41/502 (8%)

Query: 37  PSWLAS---SRVTLGLDLQGGSHILLEVDGPALRRERTEQLRDEVRRVLRDQKIGYSNLA 93
           P WL +   S + LGLDL+GG   LL VD     +E+ + + D V+  LR ++       
Sbjct: 121 PKWLGNLGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRAER------- 173

Query: 94  LRDTSVTLRLRDPNDTQKAVTELRKLAAPVTNALFGNSSGEMDLTVSSGSDGTVTLQLTD 153
           LR   V       ND  +  TE  +  + V   L  N  G     +  GSD  + +Q + 
Sbjct: 174 LRGVVVQAM---GNDAFEVKTEQPQALSHVRKYLQENYRG---WEIRQGSD-QLQVQPSQ 226

Query: 154 AGLTAKMRSAVDQSIEIIRRRIDQLGTVEPNIQRQGLDRILVQVPGLQDPQRLKNLLGQT 213
              +    + + Q+++I+R RI++LG  E  +QRQG   I +++PG+QDP + KN++G T
Sbjct: 227 QNKSEFQTATIQQNLKIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAKNVIGAT 286

Query: 214 AKLSFRMVDQSMSPQQALEGRAPPESEVLKGQDGQPYLVEKQVRVSGEDLVDAQPGFDQN 273
           A L+F    ++ SP  A       +  +L+  +G+P ++ K+  +SGE +V+A+ G D N
Sbjct: 287 ASLAFY---EAKSPTDARSY----DDLILEDGNGRPVILAKRPVLSGEHIVNARAGVD-N 338

Query: 274 SREPIVSFRFNNNGAKRFAAVSQESVGRPFAIVL-------------DNQVISAPVIREP 320
                V+   ++ G K  +  S + +G+P A V                +VIS   I+  
Sbjct: 339 MGMSEVNISLDHAGGKIMSDFSGKHIGKPMATVYREYKTNARGETVRSEKVISVATIQSQ 398

Query: 321 ILGGAGQISGSFTVQQANDLAILLRAGALPAPLKVVEERTVGPSLGADSIQAGKTAAYVA 380
            LG   +I+G+ ++++A  LA+LLRAG+L AP+ +VEERT+G SLG ++I  G  A  + 
Sbjct: 399 -LGSQFRITGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALG 457

Query: 381 GGLVTVFMLAVYGLFGLFALIALAVHIILMFSLQSVL-GATLTLPGIAGVVLTIGMAVDS 439
             +   FM   Y   G  A +AL V++  +  L ++L GA LTLPGIAG+VLT+GMAVD+
Sbjct: 458 MAMTLTFMALWYRRLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDT 517

Query: 440 NVVIFERMRDEAREGRSAISAIDKGFVNALGTILDANITSLATAVILFLMGGSGPVRGFA 499
           NV+IFER+RD+  EGR+   AID GF +A  TILDANIT++ TAVIL+ + G+GP++GFA
Sbjct: 518 NVLIFERIRDKLSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSI-GNGPIQGFA 576

Query: 500 VTYILGLLTTMFTAYTLTRLMI 521
           +T  LGLLT+MF+    +R +I
Sbjct: 577 LTLGLGLLTSMFSGVFASRALI 598