Pairwise Alignments

Query, 535 a.a., Protein translocase subunit SecD from Xanthobacter sp. DMC5

Subject, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

 Score =  330 bits (846), Expect = 9e-95
 Identities = 210/524 (40%), Positives = 306/524 (58%), Gaps = 41/524 (7%)

Query: 37  PSWLAS---SRVTLGLDLQGGSHILLEVDGPALRRERTEQLRDEVRRVLRDQKIGYSNLA 93
           P WL S   + + LGLDL+GG H L+EVD  A   +   Q  +  R  LRD+KI Y  + 
Sbjct: 110 PYWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIR 169

Query: 94  LRDTSVTLRLRDPNDTQKAVTELRKLAAPVTNALFGNSSGEMDLTVSSGSDGTVTL--QL 151
               +V + LRD    Q A T+L          L  +   +M  T S  SDG   L  + 
Sbjct: 170 PLSDAVEVTLRDAE--QLAQTKL----------LLESKHRDMTFTTSE-SDGRFVLVAKF 216

Query: 152 TDAGLTAKMRSAVDQSIEIIRRRIDQLGTVEPNIQRQGLDRILVQVPGLQDPQRLKNLLG 211
           T+A L      AV+Q+I I+R R+++LG  EP +QRQG  RI+V++PG+QD  R K +LG
Sbjct: 217 TEARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEILG 276

Query: 212 QTAKLSFRMVDQSMSPQQALEGRAPPESEVLKGQDGQPYLVEKQVRVSGEDLVDAQPGFD 271
            TA L FR VD       A  GRAP  SE+   ++G+P +++K+V + G  + DA    D
Sbjct: 277 ATATLEFREVDDKADLAAAAAGRAPAGSEIKFDRNGRPVVLKKRVILGGSSITDASSSAD 336

Query: 272 QNSREPIVSFRFNNNGAKRFAAVSQESVGRPFAIVL-------------------DNQVI 312
           +  R P V+   ++ G  + +A S++++G+  A V                      +VI
Sbjct: 337 EYGR-PQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEVI 395

Query: 313 SAPVIREPILGGAGQISGSFTVQQANDLAILLRAGALPAPLKVVEERTVGPSLGADSIQA 372
           +   I+   LG   +I+G  +  +A++LA+LLRAGAL AP+ +VEERT+GPS+G  +I  
Sbjct: 396 NQATIQSA-LGRNFRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDM 454

Query: 373 GKTAAYVAGGLVTVFMLAVYGLFGLFALIALAVHIILMFSLQSVL-GATLTLPGIAGVVL 431
           G  A       V +F +  Y  FG+ A IAL  +++L+  + S++ GAT+TLPGIAG+VL
Sbjct: 455 GIQACIWGMVAVMLFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVL 514

Query: 432 TIGMAVDSNVVIFERMRDEAREGRSAISAIDKGFVNALGTILDANITSLATAVILFLMGG 491
           T+GMAVD+NV+IFER+R+E REG++   AI +G+ NA  TI DANIT+L TA+ILF + G
Sbjct: 515 TVGMAVDANVLIFERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAV-G 573

Query: 492 SGPVRGFAVTYILGLLTTMFTAYTLTRLMIAYWVKWRRPAKLPI 535
           +G ++GFAVT  +G+LT+MFTA   TR ++      +R  KL I
Sbjct: 574 TGAIKGFAVTLSIGILTSMFTAIVGTRCIVNLLYGGKRINKLSI 617