Pairwise Alignments

Query, 535 a.a., Protein translocase subunit SecD from Xanthobacter sp. DMC5

Subject, 388 a.a., preprotein translocase subunit SecD from Methanococcus maripaludis S2

 Score = 94.0 bits (232), Expect = 9e-24
 Identities = 107/421 (25%), Positives = 186/421 (44%), Gaps = 63/421 (14%)

Query: 119 LAAPVTNALFGNSSGEMDLTVSSGSDGTVTLQLTDAGLTAKMRSAVDQSIEIIRRRIDQL 178
           LA+ +  A  G S G   + +S GS  T+ LQ T++ L+    + V+   EI+  R++  
Sbjct: 17  LASLLLIAFKGISFG---VDLSGGS--TIVLQ-TESELSESEMTTVN---EILTSRLNTN 67

Query: 179 GTVEPNIQRQGLDRILVQVPGLQDPQRLKNLLGQTAKLSFRMVDQSMSPQQALEGRAPPE 238
           G  +  I  +G D I++++P   D +R++ +L Q    +  + +Q+              
Sbjct: 68  GLSDVRIYPRGSDEIVIEIPESADLERIQKILTQQGVFTAVIDNQT-------------- 113

Query: 239 SEVLKGQDGQPYLVEKQVRVSGEDLVDAQPGFDQNSREPIVSFRFNNNGAKRFAAVSQES 298
                GQD   Y+ E  +  SG                  V F+   +GA++FA V+   
Sbjct: 114 --AYTGQDVS-YVEEPGMTASGYG----------------VGFKLTLDGAQKFADVAYGK 154

Query: 299 VGRPFAIVLDNQVISAPVIREPILGG----------AGQISGSFTVQQANDLAILLRAGA 348
            G P  + +D + ISAP++   +  G          AG       + +A  +   L++G+
Sbjct: 155 GGYPVELYMDEKAISAPLLSADLADGNIHQNQVITVAGSNPTEEDIDEAWVIYTALKSGS 214

Query: 349 LPAPLKVVEERTVGPSLGADSIQAGKTA---AYVAGGLVTVFMLAVYGLFGLFALIALAV 405
           LP  + +    +V P+LG++ I+    A   A++A   V  F      +  L  LI    
Sbjct: 215 LPVKVHIEYISSVSPTLGSEFIKGSVIAGIFAFIAVAAVISFRYKNPKIV-LPILITGFS 273

Query: 406 HIILMFSLQSVLGATLTLPGIAGVVLTIGMAVDSNVVIFERMRDEAREGRSAISAIDKGF 465
            ++L+    S++   L L  IAG++  +G  VD  +VI     DE   G +    + K  
Sbjct: 274 EVLLILGFASLIDWKLDLASIAGIIAAVGTGVDHQIVI----TDETISGEA--KKVTKSI 327

Query: 466 VNALGTILDANITSLATAVILFLMGGSGPVRGFAVTYILGLLTTMFTAYTLTRLMIAYWV 525
             A   I  A  T++A  + LF+M G G ++GFA+T I G+L  +  +      +I Y +
Sbjct: 328 KRAFFIIFGAAATTIAAMLPLFVM-GIGMLKGFAITTIAGVLMGISISRPAFSRIIQYVL 386

Query: 526 K 526
           K
Sbjct: 387 K 387



 Score = 25.4 bits (54), Expect = 0.004
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 40 LASSRVTLGLDLQGGSHILLEVDGPALRRERT 71
          +A   ++ G+DL GGS I+L+ +      E T
Sbjct: 23 IAFKGISFGVDLSGGSTIVLQTESELSESEMT 54