Pairwise Alignments

Query, 535 a.a., Protein translocase subunit SecD from Xanthobacter sp. DMC5

Subject, 624 a.a., preprotein translocase subunit SecD (RefSeq) from Shewanella sp. ANA-3

 Score =  291 bits (745), Expect = 5e-83
 Identities = 186/529 (35%), Positives = 297/529 (56%), Gaps = 40/529 (7%)

Query: 13  LVTIAIGMLFAVPNVLSPGMLDHLPSWLAS---SRVTLGLDLQGGSHILLEVDGPALRRE 69
           LV   +  + + P  L+  ++   PSWL +     + LGLDL+GG   LL+VD   + + 
Sbjct: 102 LVKTLVSSMVSEPKELTLALVSAAPSWLQNMGFEPIKLGLDLRGGVQFLLDVDVQPVYQA 161

Query: 70  RTEQLRDEVRRVLRDQKIGYSNLALRDTSVTLRLRDP---NDTQKAVTELRKLAAPVTNA 126
           + + L + +R  LR+Q+I  +++ +  T     L+     ND  ++    R         
Sbjct: 162 QADALVESLRLFLREQQIRGASVRIDSTRDDAGLQIEIAFNDAAQSTNNARS----TIRQ 217

Query: 127 LFGNSSGEMDLTVSSGSDGTVTLQLTDAGLTAKMRSAVDQSIEIIRRRIDQLGTVEPNIQ 186
               S     LT    +D  + ++L            V Q+++I+R RI++LG  E  +Q
Sbjct: 218 FMQQSYPTWQLT---NADNGLVVKLAQEEQIKLRNLTVQQNLQIMRSRIEELGITEALVQ 274

Query: 187 RQGLDRILVQVPGLQDPQRLKNLLGQTAKLSFRMVDQSMSPQQALEGRAPPESEVLKGQD 246
           RQG  RI +++PG+QDP   KN++G TA L+F  V +S S            ++VLK + 
Sbjct: 275 RQGEHRIRIELPGVQDPAAAKNVIGATASLAFFEVKESGSVN----------AQVLKDKS 324

Query: 247 GQPYLVEKQVRVSGEDLVDAQPGFDQNSREPIVSFRFNNNGAKRFAAVSQESVGRPFAIV 306
           G P  V +   + G+ +VDA+    +      V+   +  G ++ +  S+ ++G+P A  
Sbjct: 325 GNPVYVARTPVLGGDHIVDARANIGEMGMAE-VNIHLDRIGGQKMSEFSRANIGKPMATS 383

Query: 307 LDN-------------QVISAPVIREPILGGAGQISGSFTVQQANDLAILLRAGALPAPL 353
                           ++IS   I+   LG   +I+G+ T Q+A  LA+LLRAG++ AP+
Sbjct: 384 YSEYSRDEQGKAKQTQEIISVATIQSQ-LGDRFRITGAGTYQEAQQLALLLRAGSMTAPV 442

Query: 354 KVVEERTVGPSLGADSIQAGKTAAYVAGGLVTVFMLAVYGLFGLFALIALAVHIILMFSL 413
            +VEERT+GP+LGA++IQ G  A  +  G+  +FM   Y   G  A +AL  +++++F L
Sbjct: 443 TIVEERTIGPTLGAENIQNGFAALGLGMGITLLFMALWYRRLGWVANVALIANMVILFGL 502

Query: 414 QSVL-GATLTLPGIAGVVLTIGMAVDSNVVIFERMRDEAREGRSAISAIDKGFVNALGTI 472
            +++ GA LTLPGIAG+VLT+GMAVD+NV+IFER++D+ +EGRS   AID GF +A  TI
Sbjct: 503 LALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFSTI 562

Query: 473 LDANITSLATAVILFLMGGSGPVRGFAVTYILGLLTTMFTAYTLTRLMI 521
            DAN T++ TAV+L+ + G+GP++GFA+T  LGLLT+MFT    +R +I
Sbjct: 563 FDANFTTMITAVVLYSI-GNGPIQGFALTLGLGLLTSMFTGIFASRALI 610