Pairwise Alignments

Query, 776 a.a., putative 3-hydroxyacyl-CoA dehydrogenase from Xanthobacter sp. DMC5

Subject, 708 a.a., 3-hydroxyacyl-CoA dehydrogenase, NAD-binding (RefSeq) from Shewanella loihica PV-4

 Score =  119 bits (298), Expect = 6e-31
 Identities = 106/409 (25%), Positives = 187/409 (45%), Gaps = 43/409 (10%)

Query: 4   EIKKVAVIGAGVMGAGIAAHVANAGVEVLLLDIVPEGAANRNTIAETAVEKLLKADPAPF 63
           EI+KVAVIG+G MG GIA +  N G+   +LD+  E       +     E  LK      
Sbjct: 298 EIRKVAVIGSGTMGGGIAMNFINVGIPTQILDLNGEALERGLGVIRKNYEYTLKKGKLSQ 357

Query: 64  MSKAAAKLVKPGNIEDDIAHIADCDLIIEAIIERLDLKQALYAKIEAARRPGSAVSSNTS 123
                   +  G    D A IAD DL+IEA+ E++++K+ ++  ++A  +PG+ +++NTS
Sbjct: 358 AQLDERMALLSGTT--DYADIADVDLVIEAVFEKMEIKKQVFKTLDATCKPGAILATNTS 415

Query: 124 TIPLADLTAGLPESFRRDFLITHFFNPPRYMRLLEIVSGPETNPDTVAAVARFADVKLGK 183
           T+ + ++ A    S  +D L  HFF+P   MRLLEIV   +T PD +    + A  ++ K
Sbjct: 416 TLDVDEIAA--ETSRPQDVLGLHFFSPANVMRLLEIVRANKTAPDALLTTVQLAQ-RIKK 472

Query: 184 TVVMCKDTPGFIANRLGTYWLQLAVGEAF--ALGMKVEDADAVMGRPFCFPKTGVFGLID 241
             V+     GFI NR    +L+ ++      A   +++      G P   P      ++D
Sbjct: 473 VPVVSGVCWGFIGNRATDSYLRESMSLILEGASPAQIDKVHTEFGMPMGLP-----SMVD 527

Query: 242 LVGLDLMPHVQGSLKRALPATDPFHATLRDEPLIEKMISTGYTGRKGKGGFYRLNREGGQ 301
           L G+D+    +   K      DP H       ++ K+ +    G+K   G Y       Q
Sbjct: 528 LAGIDVGILTREDRKAFTTDLDPSHFA-----ILHKLYAKQRYGQKTGRGLYIYEGRDKQ 582

Query: 302 KLKEAIDLSTGTYRP-----QAKAQVAELEDGGGRDLFALLSAPGEGGRYARSVMVRTLA 356
           +  E ++L+    +      ++  Q+++ ++   R ++ +++   EG R    ++   +A
Sbjct: 583 EDPEVLELAAEAAKEFGVTRRSPEQISD-QEILERTIYPIIN---EGAR----ILEEGIA 634

Query: 357 YAARLVPEAADDIVAIDDAMRLGYN---WKSGPFELIDKIGAARLIELL 402
             A            ID  +  G+    ++ GP +  D+IG  R++  L
Sbjct: 635 LRAS----------DIDIVLAYGFGFPIFRGGPMQYADEIGLERVLTAL 673



 Score = 47.4 bits (111), Expect = 3e-09
 Identities = 41/124 (33%), Positives = 58/124 (46%), Gaps = 12/124 (9%)

Query: 485 NSLDEGIITMLAKALKLVK--DKYKALVIYNEGSNFSVGANLGLALFACNIGAFGEVEKL 542
           NSL   + T L   LK  +  +   A+V+ + G  F  GA+         I  F   + L
Sbjct: 24  NSLGLALRTHLLADLKRAEADESVDAIVLASSGKLFCGGAD---------ISEFSSDDAL 74

Query: 543 VAAGQKTYQD-VKYAPFPVVAAPSGLALGGGCEILLHVGAVQAHAESYIGLVECGVGVLP 601
                    D ++ +P  VVAA +GLALGGGCE+ L      A   + +GL E  +G+LP
Sbjct: 75  AEPNLPQVCDALEASPKLVVAAVNGLALGGGCELTLACDYRIALPAAKLGLPEVNLGILP 134

Query: 602 AWGG 605
             GG
Sbjct: 135 GAGG 138