Pairwise Alignments

Query, 391 a.a., Multidrug resistance protein MdtA from Xanthobacter sp. DMC5

Subject, 436 a.a., RND efflux system, membrane fusion protein CmeA from Xanthomonas campestris pv. campestris strain 8004

 Score =  144 bits (364), Expect = 4e-39
 Identities = 100/342 (29%), Positives = 164/342 (47%), Gaps = 16/342 (4%)

Query: 48  QKAAPPPRVVAVLAGKAERTSLPVRVEALGTVESMVTVPVRSRVAAAVEKVGFADGATVK 107
           Q+ APPP  V+VL  K +  +LP+  + +G + +  +  VR+RV   + K  + +G  VK
Sbjct: 26  QQQAPPPPEVSVLEMKPQ--TLPLERDLVGRLSAFRSADVRARVDGVLLKRLYTEGTDVK 83

Query: 108 EGDLLYQLDPRVIDAQILQAEATLNRDKVQLEKNLRDVERYAGLATRNAVSQVQVDDART 167
           EG  L+++DP  + A +LQA+  L   +          +R   LA +  VS+  +D A  
Sbjct: 84  EGQPLFEIDPMPLRATLLQAQGQLAAAEATYANAKIAAQRARSLAPQQYVSRADIDTAEA 143

Query: 168 TADVQKAVVAQDEANLTALRVQRGYYEIRSPATGRIGVSSVRPGTVIRVDDT--LATVRQ 225
           T     A V Q    + +  +Q  +  + SP TGR G+  V  G ++   +   L TV Q
Sbjct: 144 TERSSGASVQQARGVVESASIQLSFASVTSPITGRAGIQRVTEGALVGSGEATLLTTVDQ 203

Query: 226 LAPIYVAFGLPERYIAGLRAAK---------DAKVSFTIQ-GTGETISG-GTVAVIDNTI 274
           + P+YV F +    +A LR A+         D K +  ++ G G      GT+ V   T+
Sbjct: 204 IDPLYVNFAMSSEELAALRQAQSSGNVQLSGDGKSTINVELGNGTQYPHPGTLDVSAVTV 263

Query: 275 EPQTGTLTARAIFPNADERLWPGALGAVTVTLRIEDNVVAVPSEAVQNGQDGPFVFIV-D 333
           +P TG ++ RA  PN +  L PGA      +L   +N   VP +A+Q    G +  ++  
Sbjct: 264 DPSTGAVSLRATLPNPEMALLPGAFVTFKASLGQRNNAYLVPQQALQRDATGAYALVLGK 323

Query: 334 DGIAHVRPVTVTRTVDGRSVIAKGLDGGETVVTDGQLSLREG 375
           DG    + +TV     G+ ++  G+  G+ V+ DG    +EG
Sbjct: 324 DGKVVRKNLTVDGQQKGQWIVTAGMAPGDQVIVDGVQKAKEG 365