Pairwise Alignments

Query, 298 a.a., High-affinity branched-chain amino acid transport system permease protein LivH from Xanthobacter sp. DMC5

Subject, 304 a.a., High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  122 bits (307), Expect = 8e-33
 Identities = 88/297 (29%), Positives = 152/297 (51%), Gaps = 15/297 (5%)

Query: 6   FFQLLVSGIAMGAIYTLTAKGLFITHLATHRLNFGQGDFLMVGAFA---SIGMLTA-GVP 61
           F Q L++G+ +G++Y L A G  + +     +NF  G+  M+ A+    S+ +L   G+ 
Sbjct: 5   FLQQLINGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLAYFGIE 64

Query: 62  A-PLAVLGVLV----LMGVLGYLLERFAIRPLDRLGDRAGAYSWVLTTAGAALILQNIVE 116
           + PL +LG LV    + GV G+++ER A +PL R   R      +++  G +LILQN  +
Sbjct: 65  SFPLMILGTLVFTVVVTGVYGWVIERVAYKPL-RNSTRLAP---LISAIGISLILQNYAQ 120

Query: 117 LGFGKSAQYAPPLFSKTRDNVISILGVGIFFEEAAIIITAFIVVGAFYWFLFGSRWGKAV 176
           +  G   Q  P L        I    V + + +  I+I AF  +    + +  ++ G+  
Sbjct: 121 ISQGARQQGVPTLLEGAMRLDIGSGFVQLTYTKIFILIAAFAGMAVLTYIIKYTKLGRMC 180

Query: 177 YAVAFNPEAASLFGIDVRGVVVLVFVLAALMAGISGVLVGPLVSVHP-HMGLIFTIKALA 235
            A   + + AS+ GI+   V+  VF++ A MA ++GVL+         + G I  IKA  
Sbjct: 181 RATQQDRKMASILGINTDRVISYVFIIGAAMAALAGVLITMNYGTFDFYAGFIIGIKAFT 240

Query: 236 VAAVGGFTNPVGILLGGLLFGVAEA-FSNYWDSAFGDLYPLLFVMALLAVRPSGLFG 291
            A +GG  +  G +LGG++ G++E+ FS   +S + D++    ++ +L  RP GL G
Sbjct: 241 AAVLGGIGSLPGAMLGGIILGISESLFSGLINSDYKDVFSFSLLVLILIFRPQGLLG 297