Pairwise Alignments

Query, 271 a.a., Inner membrane ABC transporter permease protein YdcV from Xanthobacter sp. DMC5

Subject, 256 a.a., spermidine/putrescine ABC transporter permease PotC from Vibrio cholerae E7946 ATCC 55056

 Score =  224 bits (571), Expect = 1e-63
 Identities = 107/249 (42%), Positives = 175/249 (70%), Gaps = 3/249 (1%)

Query: 8   FNVTSIVLGFAFLYIPIILLVIYSFNASRLVTVWAGFSTQWYWSLLENEQLIDAAWVTLR 67
           F+  S+V  + FLY+PII+L+  SFN ++    W GF+T+WY +L+ N+ L+ AAW ++ 
Sbjct: 7   FSFMSLV--YLFLYLPIIVLIANSFNENKFGIKWGGFTTKWYHALMNNDSLMQAAWHSIN 64

Query: 68  IAFFSSLVATVLGTMAALALTRYGRFGGRTLFSGMIYAPLVMPEVITGLSLLLLFVAVNF 127
           +A FS+  AT++G++ A+AL RY +F G+ + SGM++  ++ P+++  +SLL LF+ +  
Sbjct: 65  VAVFSATAATLIGSLTAVALFRY-QFKGKKVVSGMLFVVMMSPDIVMAISLLALFLVMGA 123

Query: 128 DRGFWTVLLAHITFTMCFVAVVVQSRLVTFDRTLEEAALDLGCPPFQTFFKITLPLILPA 187
             GF+T+L+AHITF + FV V V +RL  FD  + EAA DLG   +    KI LPL  PA
Sbjct: 124 KLGFFTLLIAHITFCLPFVVVTVYTRLNGFDVKMLEAAKDLGAGEWVILKKIILPLAKPA 183

Query: 188 VVSGFMLAFTLSLDDLVIASFTTGPGATTLPMRIYSQVRLGVTPEINAVCTILIAIVTVV 247
           V +G++L+FTLSLDD++I+SF TGP    LP++IYS V++G++PE+NA+ T+++ +  V+
Sbjct: 184 VAAGWLLSFTLSLDDVIISSFVTGPTYEILPLKIYSMVKVGISPEVNALATVMLVVSLVL 243

Query: 248 VIVASIVTK 256
           V+ + ++ +
Sbjct: 244 VVASQLLAR 252