Pairwise Alignments

Query, 271 a.a., Inner membrane ABC transporter permease protein YdcV from Xanthobacter sp. DMC5

Subject, 275 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Shewanella loihica PV-4

 Score =  274 bits (700), Expect = 2e-78
 Identities = 136/252 (53%), Positives = 187/252 (74%), Gaps = 6/252 (2%)

Query: 16  GFAFLYIPIILLVIYSFNASRLVTVWAGFSTQWYWSLLENEQLIDAAWVTLRIAFFSSLV 75
           G  FLY P+ +LV YSFN S+LVTVW GFS +WY  L  ++Q++DA   +L++AFF+S +
Sbjct: 18  GMFFLYAPMFILVFYSFNESKLVTVWGGFSAKWYGELFRDDQILDAVATSLKVAFFASTM 77

Query: 76  ATVLGTMAALALTRYGRFGGRTLFSGMIYAPLVMPEVITGLSLLLLFVAVN------FDR 129
           A +LGTMAA  +TR+ R  G+   S MI APLVMPEVITGLSLLLLFV +        +R
Sbjct: 78  AVILGTMAAFVMTRFARSWGKMTLSNMITAPLVMPEVITGLSLLLLFVHMADLLGWPAER 137

Query: 130 GFWTVLLAHITFTMCFVAVVVQSRLVTFDRTLEEAALDLGCPPFQTFFKITLPLILPAVV 189
           G  TV +AH TF   +VAVVV SRL   D ++EEAA DLG  P +TFF IT+P+I PA++
Sbjct: 138 GMLTVWIAHSTFCAAYVAVVVSSRLRELDMSIEEAAQDLGATPLKTFFHITVPMISPALI 197

Query: 190 SGFMLAFTLSLDDLVIASFTTGPGATTLPMRIYSQVRLGVTPEINAVCTILIAIVTVVVI 249
           +G++L+F+LSLDDLVIASF +GPGATTLPM ++S VR+GV+P+INA+ T++I IV+++  
Sbjct: 198 AGWLLSFSLSLDDLVIASFASGPGATTLPMVVFSSVRMGVSPKINALATLIILIVSLIAF 257

Query: 250 VASIVTKRAENQ 261
           ++  + +RA+ +
Sbjct: 258 ISWYLARRADKR 269