Pairwise Alignments

Query, 249 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 201 a.a., cytochrome c oxidase, cbb3-type, subunit II (RefSeq) from Shewanella loihica PV-4

 Score =  214 bits (544), Expect = 1e-60
 Identities = 115/223 (51%), Positives = 145/223 (65%), Gaps = 30/223 (13%)

Query: 12  HQIFEKHSYWLMLGILVMISIGGLVEIAPLFYLKSTIEKVEGMRPYTPLELAGRNIYVRE 71
           H+I EK+   L +  ++ ISIGGLV+I PL + K T E V G+RPY+ LEL GR+IY+RE
Sbjct: 5   HEIVEKNIGLLGIFTVIAISIGGLVQITPLLFQKDTTEPVNGLRPYSALELEGRDIYIRE 64

Query: 72  GCYNCHSQMIRPLRDEVERYGHYSLAAESMYDRPFQWGSKRTGPDLARVGGKYSDLWQVE 131
           GC  CHSQMIRPLR E ERYGHYS+A ES++D PF WGSKRTGPDLARVGG+YSD W   
Sbjct: 65  GCVGCHSQMIRPLRAETERYGHYSVAGESVWDHPFLWGSKRTGPDLARVGGRYSDKWHEV 124

Query: 132 HLNNPRSVVPASIMPSYPWLAKTRLNAKHIGEEMRVQQVLGVPYTDEMIAKAQDDLKTQA 191
           HL +PR+VVP S MP++PWLA+  L+ +   ++M V +  GVPY+       QDD+    
Sbjct: 125 HLLDPRAVVPQSNMPAFPWLAENVLDGELTAKKMEVFRGFGVPYS-------QDDI---- 173

Query: 192 TTDAADSDGLQKRYPKAQGRDYDGNPGELTEADALIAYLQMLG 234
                  D  +K     +G+         TE  ALIAYLQ LG
Sbjct: 174 -------DNAKKA---VEGK---------TEMQALIAYLQSLG 197