Pairwise Alignments

Query, 325 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 406 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

 Score = 82.8 bits (203), Expect = 1e-20
 Identities = 84/289 (29%), Positives = 134/289 (46%), Gaps = 46/289 (15%)

Query: 15  LALAAALGLAGCDGERAGGFSG---------YVEGDLVFIGPTEAGRVSELLVEEGAQVK 65
           L LAAA+ +AG        F G         Y   ++  + P   G ++++ V +   VK
Sbjct: 35  LGLAAAIVVAGGSYALYWHFIGSRYISTDNAYAAAEIAEVTPAVGGIIAQVNVVDTEYVK 94

Query: 66  AGQVLAKVEDDLQTADRDAAAAQLKEAEARLANA----RSPLQRPEEVAVL----EASER 117
            G VL +++D       DA  A L +AEA LA A    RS L   E ++ +    EA+E+
Sbjct: 95  QGDVLVQLDDT------DARLALL-QAEADLALAKRRVRSYLANDEGLSAMVEAQEANEQ 147

Query: 118 RAAAAL-------DLSRIELNRQKTLVPKGASSQANLDSAQHQYDQNQAALDEAQRRIAA 170
           R  A L       + ++I+L+R++ LV  G+ S   L +A+  + Q QA L+ A+  +A 
Sbjct: 148 RVKAQLKAAQADFERAKIDLSRREDLVRSGSVSGEELTNAKTGFAQAQANLNAAKAAMAQ 207

Query: 171 ARIA--------------SRNQDIDAAEQAAQAAKANLAAAQIRLDRRTVKAPADGPVQT 216
           A+                + N  +D+  +    AKA    A+I L+R  ++AP  G V  
Sbjct: 208 AQATKLSTIGSQKANAALTDNTTVDSNPEVL-LAKARYEQAKIDLERTVIRAPISGIVAK 266

Query: 217 VYYRPGEMVPEGRPIVSVLPPGLVKVRFFVPEAQLPKVAAGAPVTVTCD 265
              + G  V  G P+++V+P   + V     E +L  V  G PVT+T D
Sbjct: 267 RQVQVGRRVQVGMPLMTVVPTDHIYVDANFKEVELRDVKVGQPVTLTAD 315