Pairwise Alignments

Query, 592 a.a., Nif-specific regulatory protein from Xanthobacter sp. DMC5

Subject, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  259 bits (663), Expect = 1e-73
 Identities = 151/368 (41%), Positives = 216/368 (58%), Gaps = 10/368 (2%)

Query: 222 RKRVYVDGIIGDSREIRGLLDKIMIVAKSHSPVLLRGESGTGKELIAKAIHELSPRAKGP 281
           RK      ++G S  I+ +   I  V+ + + VL+ GESGTGKE++A+ IH  S R  GP
Sbjct: 129 RKNTLFRSLVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKEVVARNIHYHSGRRNGP 188

Query: 282 FIKLNCAALPESVLESELFGHEKGAFTGAVGARKGRFELADKGTLFLDEIGEISPSFQAK 341
           F+ +NC A+P  +LESELFGHEKGAFTGA+ ARKGRFELA+ GTLFLDEIG++  S Q K
Sbjct: 189 FVPINCGAIPAELLESELFGHEKGAFTGAITARKGRFELAEGGTLFLDEIGDMPMSMQVK 248

Query: 342 LLRVLQEQEFERVGGSHTLKVNVRVVAATNKNLEEAVAKNEFRADLYYRISVIPVIVPSL 401
           LLRVLQE+ FERVGG+ T+K NVRV+AAT++NLEE +   +FR DLYYR++V P+ +P+L
Sbjct: 249 LLRVLQERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDLYYRLNVFPIEMPAL 308

Query: 402 RDRRGDIPLLANEFLDRFNRENGRDLHFNQDAMDVLMGCGFPGNVRELENCVQRTATLAQ 461
           RDR  DIPLL  E + R   E  + + F   A++ +M   +PGNVREL N V+R   L  
Sbjct: 309 RDRIDDIPLLLQELMTRMEAEGAQPICFTPRAINSMMEHDWPGNVRELANLVERMVILYP 368

Query: 462 GGSIVGDDFACRHNECLSALLWRSPADAPQTRRPMEIPLPVMPPLSAISGEAANSNTVPR 521
              +  +    ++           P   P+  R   +       L  I  E  N      
Sbjct: 369 NSLVDVNHLPTKYRYS------DIPEFQPEPSRFSSVEEQERDVLEGIFAEDFNFEEPQE 422

Query: 522 -LPPLTVPVPTPAPAVPVRATVLDEEMSERERLVDAMERAGWVQAKAARLLGLTPRQIGY 580
            +P +  P   P   V ++  + D E++    +  A+E  G V A+AA +LG+    +  
Sbjct: 423 FVPDIDAPQALPPEGVNLKELLADLEVN---LINQALEAQGGVVARAADMLGMRRTTLVE 479

Query: 581 ALKKHDIE 588
            ++K++++
Sbjct: 480 KMRKYNMQ 487