Pairwise Alignments

Query, 170 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 520 a.a., chemotaxis protein CheW from Vibrio cholerae E7946 ATCC 55056

 Score = 58.9 bits (141), Expect = 1e-13
 Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 4/136 (2%)

Query: 20  VQYVTVRIGPQLFGLPIALVHEVF-VPEAITRVPLAPGEIAGVLNLRGRIVTMVAMRRLL 78
           +Q V  ++  + FG+ I  V E+  +PE I+RVP     I GV+NLRG ++ +V MR+  
Sbjct: 369 MQLVIFKLDKEEFGISIHTVQEIIRIPENISRVPKTDDFIEGVINLRGNVLPIVDMRKRF 428

Query: 79  SLPD--AEGAPMAVGIEHHGEAFGLIIDEVGEVLSLDAARREANPANLDPRWAQVAAGVH 136
            LP+         + +     + G I+D V EVL +  ++ E  P  L    AQ+   + 
Sbjct: 429 HLPEMARHERQRILVVNFEKISTGFIVDSVSEVLRIPESQLEDAPV-LSEEQAQLMRQMV 487

Query: 137 RLSGDLMLILNVDLVL 152
            LS  ++ +L+ D ++
Sbjct: 488 NLSPRMIGVLSADQLI 503



 Score = 52.4 bits (124), Expect = 1e-11
 Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 8/103 (7%)

Query: 18  DVVQYVTVRIGPQLFGLPIALVHEVF-VPEAITRVPLAPGEIAGVLNLRGRIVTMVAMRR 76
           D+ Q V   +  Q +  P+    E+  +PE IT+VPL    I GV+NLRG+ + +V++R 
Sbjct: 189 DMRQLVCCMVDGQEYAFPLEDTQEIVRIPEIITKVPLTESAILGVINLRGKTLPLVSLRT 248

Query: 77  LLSLPDAEGAP----MAVGI---EHHGEAFGLIIDEVGEVLSL 112
           L  LP    +     + V I   E      G+++D V EV+ L
Sbjct: 249 LFGLPSISFSDSHRVLVVNISLSEKERLPVGVVVDAVREVIRL 291



 Score = 47.0 bits (110), Expect = 5e-10
 Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 8/143 (5%)

Query: 18  DVVQYVTVRIGPQLFGLPIALVHEVFVPEAITRVPLAPGEIAGVLNLRGRIVTMVAMRRL 77
           ++ QYV   +G +LF L +  V E+        VPL P  + G+ NLRG+I+ ++ +R L
Sbjct: 16  NLTQYVNFMLGDELFALHMQEVEEIIRLPTTFSVPLTPSYLIGLSNLRGQILPVLCLRTL 75

Query: 78  LSL--PDAEGAPMAVGIEHHGEAFGLIIDEVGEVLSLDAAR-REANPA--NLDPRWAQVA 132
           L +    A  A   + I       G  +D V  V + D    +  N A   +DP    + 
Sbjct: 76  LCMDRTSATEATRVIVITIGKTKIGFTVDRVVNVATPDPEMIKPTNTAGGKIDP--TLIT 133

Query: 133 AGVHRLSGDLMLILNVDLVLDRA 155
             +H     ++ +LN   +LD +
Sbjct: 134 NTIHS-DNQIIQVLNCHRLLDNS 155