Pairwise Alignments

Query, 693 a.a., Flagellar biosynthesis protein FlhA from Xanthobacter sp. DMC5

Subject, 685 a.a., Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) from Pseudomonas fluorescens FW300-N2E2

 Score =  335 bits (860), Expect = 3e-96
 Identities = 216/693 (31%), Positives = 365/693 (52%), Gaps = 37/693 (5%)

Query: 12  GSRRDIGFAMGMVGILAILFLPIPPALIDIGLALSIALSVLILMVALWIDKPLEFSAFPT 71
           G+R ++     MV I+A+L +P+P  L+D  + L+I +S+L+ M + +I++ L +S FP 
Sbjct: 12  GARPELLILTLMVMIIAMLIIPLPTVLVDFLIGLNIVISLLVFMGSFYIERILSYSTFPA 71

Query: 72  VLLIATLLRLGLGVATTRLILAHGSDGVSAAGHIIHGFSQLVMSGDFVIGIVVFLILVTV 131
           +LL+ TL RL L ++T+RLIL+        AG II  F   V+    V+G V+F I+  V
Sbjct: 72  LLLLTTLFRLALSISTSRLILSQAD-----AGEIIASFGDFVIGESLVVGFVIFSIVTIV 126

Query: 132 NFLVITKGATRIAEVGARFTLDAIPGKQMAIDADLNAGLIDDKQAQRRRAELEEESAFFG 191
            F+VITKG+ R+AEV ARF+LD +PGKQM+ID DL AG ID  QA+ +R+ LE ES  +G
Sbjct: 127 QFIVITKGSERVAEVAARFSLDGMPGKQMSIDGDLKAGAIDAAQAREKRSVLERESQLYG 186

Query: 192 SMDGASKFVRGEAVASLITIAVNIFGGIIIGVTRHKMPIADAADIFTRLSVGDGLVSQIP 251
           S DGA KF++G+A+A +I I VN  GG+ IGV +  M ++ A   +T L++GDGLV+QIP
Sbjct: 187 SFDGAMKFIKGDAIAGIIIIFVNFIGGMAIGVGQLGMDLSTALSTYTLLTIGDGLVAQIP 246

Query: 252 ALIVSLSAGLLVSK-GGTRGRAEKAVLGQLGAYPRALFVAAGLLLALALVPGLPFLPFAI 310
           AL++++ AG +V++  G      + +L Q+   P  L V A L + + L+PG P L F  
Sbjct: 247 ALLIAIGAGFIVTRVNGDDSNLGRNMLTQMLGNPFVLGVTALLAVGVGLLPGFPLLTFLS 306

Query: 311 IGGMMAFVGWSVPRQLARQKAEADAREADAKQQADREARESVKEQLKTAEIEVCVGKQLA 370
           I G++  V +   R+ +RQ +  ++R A+A +Q    +   + + +     E      L 
Sbjct: 307 IAGVLGLVVFVRQRKSSRQASPGESR-AEAAEQNTLPSESGLLDDVDNLATETIALMLLV 365

Query: 371 TQVLRTPSELGNRLGKMRRKFALRYGFVVPEIRMTESLAAPAKGYQIKMHGTVLAAQEMR 430
            +      E      + R +F + YG  +PE R+  S A PA       H   +   E+R
Sbjct: 366 PKTQLEALEKQRWAARFRSQFFVDYGLRIPEPRLRASEALPA-------HQVAVLINEVR 418

Query: 431 IGELLV------VVGDGPPPD------VPGDEAREPAFGMKAMWIPEAYATEVKREGF-- 476
             +  +      ++   P  D      V G+++      +  +W+  A    V++ G+  
Sbjct: 419 AEQFDIHFDHWRLLDYSPELDPLGFALVRGNDSNR----LGGVWVSAADRERVQQLGYHL 474

Query: 477 APVDNLTVILTHLSEAIANNLPQLLSYKSMRSLIDRLDPEYKRLVEDICPAQISYSGLQA 536
            P D        L   +A N+ +    +  + L+D ++     L++++    ++   +  
Sbjct: 475 RPADE--ECYRCLVTLLARNIQEFFGVQETKQLLDEMETRCPDLLKEVY-RHVTVQKIAE 531

Query: 537 VLKLLLAERVSIRNLHLILEAVAEIVPHARRSEQVAEHVRMRMAQQICGDLAEGGVLNVL 596
           VL+ L+ ER+S+RN+ LILE++A      +    + EHVR  MA+ I    A+G  L VL
Sbjct: 532 VLQRLIGERISVRNMKLILESLAHWASREKDVLALVEHVRGAMARYISNKFAQGNDLRVL 591

Query: 597 RLGSRWDLAFHQSLKRDAKGEVIEFDIDPRLVEQFGTEAATAVRERMKAGAPFVLVTAPD 656
            L   ++    + +++ + G  +  +++P   E+     +  +     A    VL+ + D
Sbjct: 592 LLSPEFEEVVRRGIRQTSGGSFL--NLEPAESEELMDRLSVGLDSVHIAHKDMVLLCSVD 649

Query: 657 ARPYVRMIVERMFPSLPVLSHVEIARGVEIKAL 689
            R Y++ ++E  F  L V+S  EI+  V +  +
Sbjct: 650 VRRYIKKLIEGRFRELDVMSFGEISESVSVNVI 682