Pairwise Alignments

Query, 311 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 343 a.a., flagellar motor switch protein FliM (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  102 bits (254), Expect = 1e-26
 Identities = 64/273 (23%), Positives = 124/273 (45%), Gaps = 2/273 (0%)

Query: 26  RLPMLHVLFDRMATFCADGLRQVAASQAYYSLSSVESGRIGDVLEAYEGMAIAGIFNAPS 85
           R+P L ++ +R A      +  +    A  S++ V+  + G+ +          +     
Sbjct: 48  RMPTLEIVNERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFHP 107

Query: 86  WDSQLIVGFDRDFIFTMIEVLFGADGSEPPVEDERSFSNIEGRVAQLLFEQMTKALKSAF 145
                ++  +   +F +++  FG DG      + R F+  E R+ QLL + + +  K A+
Sbjct: 108 LKGTALITMEARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAW 167

Query: 146 ALVSDTTFQFERQETRMDFAVIGRRNNLAVTAKFLLQALNRGGEMFVTIPQSALTPLRRA 205
           A V D  F +   E     A I     + V   F ++    GG+  +T+P S + P+R  
Sbjct: 168 APVMDVEFDYLDSEVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYSMIEPIREL 227

Query: 206 LASTSQAETGGRDPKWAQKIRDEVNRTEVELRAVLDEHEVTLGDIAALKVGQILKLDATP 265
           L +  Q++    D +W+Q + DE+   +V   A + EHE+TL D+   K G I+ ++   
Sbjct: 228 LDAGVQSDKQDTDMRWSQALHDEIMDVKVGFDATVVEHELTLKDVMNFKAGDIIPIELPE 287

Query: 266 ASRVKLESAAQPLFWCHLGQSDGGYVVRLDEQI 298
              +++E    P + C +G+S     +++ E+I
Sbjct: 288 YIMMRIEDL--PTYRCKMGRSRDNLALKIYEKI 318