Pairwise Alignments

Query, 358 a.a., Flagellar biosynthetic protein FlhB from Xanthobacter sp. DMC5

Subject, 346 a.a., type III secretion protein, hrpY/hrcU family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  154 bits (389), Expect = 3e-42
 Identities = 100/341 (29%), Positives = 178/341 (52%), Gaps = 5/341 (1%)

Query: 10  KTEEASEKKISDAVEKGNVPFSREAALFASLLGILAILAFFVTAPVRLLTADLSRLIDDP 69
           KTE+ + K++ +A EKG++  S++     S + +LA+  +F  A   +  A L  + +  
Sbjct: 4   KTEQPTPKRLREAREKGDICKSQD---IGSAVTVLAVAGYFAFAGESIF-ASLMEVTELS 59

Query: 70  AGFPISTGNDAVSILWGALAGAG-RFLMPMVIVLMLAGLVASGFQNVPSLVAERIRPQWS 128
                   ++A+ +L  A+  A    ++P+V + M+A  + +  Q       +   P+  
Sbjct: 60  MRHMAMPFDEALPLLGTAVVHAAVGIVLPVVGLAMMAAFLGTLAQTGVLFAFKGAMPKLE 119

Query: 129 RVSPSAGFKRIFGTQGHIEFGKALFKLFAIGIVAALVLYAQEHEVVNAMFTDPLRLPSVL 188
            +SP   FK++F  +  +E  K   K+  +G     V+      + +    D   L  VL
Sbjct: 120 NISPGKWFKKVFSMRNAVELLKNCIKVGVLGWAVWKVMSDHMRGLFSIPDGDIGLLLKVL 179

Query: 189 LALAMRLVATVCVVTIGLVAADIVWSRVSWKTNLRMTKQEVKDEFKQAEGDPMVKARIRA 248
              A  +V    VV   + A D ++ R  +     MTK EVK E+K+ EGDP +K + + 
Sbjct: 180 GTAARDMVLMAAVVFCVIAALDYLYQRWQYNKQHMMTKDEVKREYKEMEGDPHIKGKRKQ 239

Query: 249 VARERARQRMMNAVPKATVVIANPTHYAVALQYDRQTGGAPLVVAKGVDLIALKIREIAE 308
           + +E   Q  ++ V KA V++ NPTH+AVAL Y++     P+++AKG  L+A ++ EIA 
Sbjct: 240 LHQEMLAQNTLSNVRKAKVIVTNPTHFAVALDYEKDRTPLPVILAKGEGLMARRMVEIAR 299

Query: 309 RHGVPVIEDRPLARALFAAVEVDQWIPQDFYRPVAKILHYI 349
             G+PV+++ PLAR+LFA    + +IP++   PVA++L ++
Sbjct: 300 EEGIPVMQNVPLARSLFAEGTENAYIPKELIGPVAEVLRWV 340