Pairwise Alignments

Query, 1167 a.a., Sensor histidine kinase RcsC from Xanthobacter sp. DMC5

Subject, 1147 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  805 bits (2078), Expect = 0.0
 Identities = 478/1172 (40%), Positives = 703/1172 (59%), Gaps = 46/1172 (3%)

Query: 2    LQASVVIFVALAYIGLLFAIASYGDRLRPGAGRGAARPMIYSLSLAVYCTSWTFFGSVGL 61
            +Q  +VI V+LAY+G+LF IA YGDR          RP IYSLS+AVYCTSWTF+G+VG 
Sbjct: 1    MQGWLVIPVSLAYLGVLFLIAWYGDRQTRWLANW--RPWIYSLSIAVYCTSWTFYGTVGQ 58

Query: 62   ATTQGFDFLTIYLGPIILMTVGAPLFLRVVRLAKANNITSIADFIAARYGKNQGIAALVA 121
            A+   + FL IY+ PI++   G  +  R++ +AK  +ITS+ADFIAARYGK+QG+A  V 
Sbjct: 59   ASVNPWSFLPIYIAPILMFVFGWRVLARLILIAKREHITSLADFIAARYGKSQGLAVAVT 118

Query: 122  IVAIIAAIPYISLQLKAVSASLVALLGHFAGEHGRGTLVGDLALFVACAMAAFAILFGTR 181
            ++A++  +PYI+LQL+ ++  L  +       +G       ++ FV  A+A F +LFGTR
Sbjct: 119  VIAVLGILPYIALQLRGITMGLNIVAPDLMTVYGYQE--SHVSWFVVLALALFTMLFGTR 176

Query: 182  HTDATEHQNGLMLAIATESLVKLAAFLGVGLLVTFVIF--DGPFSLWYAAREASAVAPFE 239
            H D TEH  G+M+AIA ES+VKL AFL VG+ + ++ +  DG         E S +A   
Sbjct: 177  HIDNTEHHRGMMMAIAFESIVKLVAFLCVGVFIAYLAWRTDG--------LELSTIAAST 228

Query: 240  RGLSLENWLTM---TILSGGAFMLLPRQFHVAVVENKGESEIRRARWLFPLYLVLINLFV 296
                  NW T+   T+L+  A + LPRQFH  VVEN+   ++  ARWLFP+YL+L++LFV
Sbjct: 229  --YQAPNWPTLLIHTLLTMIAIVCLPRQFHTMVVENERPQDLHTARWLFPVYLLLMSLFV 286

Query: 297  VPLALAGMTLFPLNLVDSDVYVLAVPLAAGFDSLALLAFVGGLSAATAMVIVECVAIAIM 356
            +P+A  G  L P      D +V+++P+ AG   +ALLAF+GG SAA+ MVIV  +A+AIM
Sbjct: 287  LPIAWTGQGLLPNT--SPDTFVISLPVFAGAHDIALLAFLGGTSAASGMVIVSTIALAIM 344

Query: 357  VSNDLVMPLVLRRRAAKPEGEPREDMTGLLLMVRRISIFAIVLLAYLYYRTTGEA-QLAQ 415
            VSNDLVMPL+LRR             +GLL+++RR  I  ++  A+ +Y        L+ 
Sbjct: 345  VSNDLVMPLLLRRMRLSQR--THRHFSGLLVVIRRTLILLLLFGAWGFYLVLDSIPSLSA 402

Query: 416  IGLLSFAAIAQVGPAFAAGLIWQRATAAGAIAGIVVGGATWAYTLMMPSLAEAGLISAGV 475
            IG LSF+AI Q  PA   G+ W+     G   G+ VG   W  TLM  +   AG  S  V
Sbjct: 403  IGFLSFSAITQFAPAIFGGMYWREGNRKGVYVGLAVGFTLWLITLMSATDMLAGDASNNV 462

Query: 476  LQNGPFGISLLRPTALLGLTAGPLAHGVAWSLGLNTLALVIVSFLTRPSQIERTQARLFA 535
            L        +  P  L+ L       G+  S+ LNTL  + VS +TR S  ER QA  F 
Sbjct: 463  LL-----WVITPPDWLVALGLKSADWGMLLSVTLNTLCYIGVSLVTRASLSERLQAAAFV 517

Query: 536  GTGDRPPARPAFLRWRSSVSLGELMATVERYLGAERARAAFDSYARQHGFALDTHREADA 595
            GT    P       ++S V++GEL     R++G  R R AF  Y  Q    L  +++A +
Sbjct: 518  GTP--LPENENMSLYQSRVTVGELEMLASRFVGRTRVRNAFAQYWSQQRETLLPNQQASS 575

Query: 596  GMVRHAEHLLASAVGAASSRLVLSLLLRKRAVSTKAALKLLDDASAAIQYNRELLQSAID 655
             ++RH E +LA   GA+S++LVL+  L+ R +  +    ++D+AS    ++R LLQ AI+
Sbjct: 576  ALIRHTERVLAGVFGASSAKLVLTSALQGRKMQLEEVATIVDEASELYDFSRGLLQGAIE 635

Query: 656  HVRQGIAVFDRDLRLVCWNRQFGQMLDLPGECYAVGVPLTDILA-------AAPADEDVA 708
            H+ QGIAV D+ LRLV WN+++ ++ + P     VG P+ D++          P D +  
Sbjct: 636  HIGQGIAVVDKQLRLVAWNQRYLELFEFPPGLIQVGRPIADVIRHNAQQGLCGPGDPE-- 693

Query: 709  GDISARVARYVTPDPDFSERLHQRGAVIEARSDPMPDGGIAVTFTDITASVEAALALERA 768
              +  RV          S R+   G VIE + +PMP GG  ++FTDIT   EA  +L+ A
Sbjct: 694  DHVRRRVYHLEQGTSHTSSRVRADGRVIEVQGNPMPGGGFVMSFTDITVFREAEQSLKMA 753

Query: 769  NETLEKRVRERTEELERLNGALELAKAEADEANLSKTRFLAAASHDILQPLNAARLYATS 828
            NETLE+RV +RT ELE+LN  L  A   ++  + SK+RFLAA SHD++QPLNAARL+A+S
Sbjct: 754  NETLEERVLQRTLELEKLNKQLVTATQRSERESQSKSRFLAAVSHDLMQPLNAARLFASS 813

Query: 829  MVERAKGSEEERLAGNIDASLESVEEILGALLDISRLDSGVMRPEFSAFRIADVLKPLET 888
            + E AK +E ++LA +I+++L + E+++  LLDISRL+SG +     +F I DVL  L  
Sbjct: 814  LSEVAKEAEVQKLAHHIESALGAAEDLISDLLDISRLESGKIDLHPHSFAIMDVLSNLNA 873

Query: 889  EFAPLAREKNLELTFLPCSLAVRSDRRLLRRLLQNLVSNAVKYTQRGRILVGCRRVG-GK 947
            EF+ LA ++ ++ + +P  L V SD +LLRR++QN ++NA +Y   G++++G RRV  G+
Sbjct: 874  EFSALAAKQGVQFSLVPSLLWVHSDPKLLRRVIQNFLTNAFRYNPNGKVILGVRRVATGQ 933

Query: 948  LRVEVYDTGVGIPRSKHKLVFQEFQRLDQGAKAARGLGLGLSIVERIARVLEHPVALRST 1007
            +R++V+D G+GI + K + +F+EF R  Q  ++ +GLGLGL+I + IA VL H +++RS 
Sbjct: 934  VRIDVWDNGIGIEQDKQQEIFEEFNRGGQ-VRSDQGLGLGLAISKGIAHVLGHHISMRSW 992

Query: 1008 HGKGSAFTVELPVAVSMPEE-REAAPSPARRGAQLDGLTILAIDNEPTILEGMQMLLTGW 1066
             G+GS F++ L  A  MP    +       +G++L  L +L +DNEP IL GM+ LL  W
Sbjct: 993  PGQGSVFSITLDRAQPMPSSLTQTVAMVNEKGSELQHLRVLCVDNEPDILVGMRDLLERW 1052

Query: 1067 GCDVITAANAQGAIEAVRHRRKKPDVALVDYHLDGGH-GIEAIMSLRWKLGK-IPAVLIT 1124
            GC+V TA +  G+++A+   +  PDV L DY LD G  G+E +   R +LG     V+I+
Sbjct: 1053 GCEVKTATDIHGSLKAL-EGQWIPDVILSDYRLDNGRTGLEVLQQCRLRLGDCFAGVIIS 1111

Query: 1125 ADRSKKVRDAARAADMEILNKPLKPAALRAIL 1156
            ADR+  + D   ++    + KP+KP  LRA+L
Sbjct: 1112 ADRNPDILDGIESSGFRFMAKPIKPLKLRALL 1143