Pairwise Alignments

Query, 1167 a.a., Sensor histidine kinase RcsC from Xanthobacter sp. DMC5

Subject, 1145 a.a., sensor histidine kinase/response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  736 bits (1901), Expect = 0.0
 Identities = 447/1166 (38%), Positives = 680/1166 (58%), Gaps = 46/1166 (3%)

Query: 6    VVIFVALAYIGLLFAIASYGDRLRPGAGRGAARPMIYSLSLAVYCTSWTFFGSVGLATTQ 65
            VV  +A+ Y+ LLF +A   +R   G  +   + +IY LSLAVYC+SW+F G+VG +   
Sbjct: 6    VVAVIAICYVSLLFLLAWGAERWFSGVTK-KLQVVIYGLSLAVYCSSWSFLGTVGQSAKD 64

Query: 66   GFDFLTIYLGPIILMTVGAPLFLRVVRLAKANNITSIADFIAARYGKNQGIAALVAIVAI 125
             + F+ I++GPI++ T+G  +  ++V ++KA NITS+ADFIAARYGK+Q +AA+V ++A+
Sbjct: 65   FWSFIPIFVGPILIFTLGFGMLRKMVLVSKAQNITSVADFIAARYGKSQTLAAIVTLIAM 124

Query: 126  IAAIPYISLQLKAVSASLVALLGHFAGEHGRGTLVGDLALFVACAMAAFAILFGTRHTDA 185
               +PYI+LQLKA+  SL   L   A +   G  +   AL +   +A FAILFGTR  DA
Sbjct: 125  FGIMPYIALQLKAMVFSL--NLFQPADDPLNGVTI---ALLITALLAIFAILFGTRKLDA 179

Query: 186  TEHQNGLMLAIATESLVKLAAFLGVGLLVTFVIFDGPFSLWYAAREASAVAPFERGLSLE 245
            TEH  G+MLAIA ESLVKLAAFL VG++++F +FDG   +W  A + S +        +E
Sbjct: 180  TEHNPGMMLAIAFESLVKLAAFLLVGIVISFGVFDGFGDIWQQASDKSLI--HHPNPRIE 237

Query: 246  NWLTMTILSGGAFMLLPRQFHVAVVENKGESEIRRARWLFPLYLVLINLFVVPLALAGMT 305
              +   ++   AF+ +PRQFHV VVE   ES + + RWLFPLYL L  LFV PLALAG  
Sbjct: 238  TLMPELLVGMAAFLCMPRQFHVMVVECADESVLSKGRWLFPLYLALFGLFVGPLALAGKL 297

Query: 306  LFPLNLVDSDVYVLAVPLAAGFDSLALLAFVGGLSAATAMVIVECVAIAIMVSNDLVMPL 365
            +   + V +D YV+ +PLA     LA++A +G LSAAT MVIV  V I++MVSN+ ++P+
Sbjct: 298  ILG-DSVAADTYVINLPLALDHPLLAVIALLGTLSAATGMVIVAVVTISVMVSNEWLVPV 356

Query: 366  VLRRRAAKPEGEPREDMTGLLLMVRRISIFAIVLLAYLYYRTTGEA-QLAQIGLLSFAAI 424
            VLR    + +       + +LL  RR++I  I+ L Y  Y    ++  L+ +G+LSF A 
Sbjct: 357  VLRTGNIREKN--FSQFSQMLLNARRLAIVIILGLGYGSYLALADSDSLSHLGMLSFGAF 414

Query: 425  AQVGPAFAAGLIWQRATAAGAIAGIVVGGATWAYTL---MMPSLAEAGLISAGVLQNGPF 481
            AQ+ PA   GL W+    AG   G+ VG + W Y +   M  + + A L+S+ +      
Sbjct: 415  AQLAPALVGGLYWKHGNRAGVFLGLSVGFSLWFYIMLSGMTGNQSPAALMSSNIDL---- 470

Query: 482  GISLLRPTALLGLTAGPLAHGVAWSLGLNTLALVIVSFLTRPSQIERTQARLFAGTGDRP 541
             +  + P     LTA          L  N    V+ S   R    ER QA  F   G   
Sbjct: 471  -LDAITPNVRDALTA----------LFANIACYVLGSIWFRAGVAERIQASAFVSPG--- 516

Query: 542  PARPAFLRWRSSVSLGELMATVERYLGAERARAAFDSYARQHGFALDTHREADAGMVRHA 601
              +    +    +S  +L+    R++   RA  +F  ++ +   +   H+ A   ++ H 
Sbjct: 517  KLKNNASKKSGPISQQDLLILASRFVSPTRAYESFSRFSTEAVKSDSWHKAATPELIAHT 576

Query: 602  EHLLASAVGAASSRLVLSLLLRKRAVSTKAALKLLDDASAAIQYNRELLQSAIDHVRQGI 661
            E LLA  +GA+S+ LV+  +L+ R ++      L+D+AS+ I  ++++L+ AI+H  +G+
Sbjct: 577  ERLLAGVLGASSASLVMDSVLQGRDLALDEVFSLVDEASSKIMLSQDMLRGAIEHAYEGM 636

Query: 662  AVFDRDLRLVCWNRQFGQMLDLPGECYAVGVPLTDILAAAPA-----DEDVAGDISARVA 716
            +V D DL LV WN ++ ++   P      G+P+++++    A        +   +  RV 
Sbjct: 637  SVIDSDLNLVAWNYKYVELYQYPEGFLQQGMPISEVIRFNAARGYCGSGAIEQQVEKRVQ 696

Query: 717  RYVTPDPDFSERLHQRGAVIEARSDPMPDGGIAVTFTDITASVEAALALERANETLEKRV 776
                  P  SER  + G VI+ + +PMPDGG  +TFTDIT   +   AL  ANETLE RV
Sbjct: 697  HMRNGTPHTSERQRKDGKVIKIQGNPMPDGGFVMTFTDITQYRQQERALLEANETLESRV 756

Query: 777  RERTEELERLNGALELAKAEADEANLSKTRFLAAASHDILQPLNAARLYATSMVERAKGS 836
            +ERT EL  LN  L  AKA+ + AN SK+RFLAA  HD++QPLNAARL+  S+ +     
Sbjct: 757  KERTFELAMLNSELLEAKAQEEMANASKSRFLAAVGHDLMQPLNAARLFTASLSQYPNLD 816

Query: 837  EEERLA-GNIDASLESVEEILGALLDISRLDSGVMRPEFSAFRIADVLKPLETEFAPLAR 895
             E R    ++++SL++  E+L  LLDIS+LDSG++      F I+++L  L  EF  +A 
Sbjct: 817  REARTTLSHVNSSLKTAGELLTDLLDISKLDSGMVDVNRRDFAISELLNGLSVEFEAMAA 876

Query: 896  EKNLELTFLPCSLAVRSDRRLLRRLLQNLVSNAVKYTQRGRILVGCRRVGGKLRVEVYDT 955
            +  +    +PCS  V SD  LLRR+LQN ++NA +Y + GR+L GCR  G +L ++V DT
Sbjct: 877  DNQIRFKMIPCSATVNSDPSLLRRVLQNFLTNAYRYARGGRVLFGCRHRGSELEIQVLDT 936

Query: 956  GVGIPRSKHKLVFQEFQRLDQ-GAKAARGLGLGLSIVERIARVLEHPVALRSTHGKGSAF 1014
            G GI   +   +F+EF+RL+   +K+  GLGLGL+I +RI+RVL H + + S  G+GS F
Sbjct: 937  GCGIDEHETHEIFKEFKRLNNPRSKSVSGLGLGLAIADRISRVLNHGIQVSSQLGRGSVF 996

Query: 1015 TVELPVAVSMPEER-EAAPSPARRGAQLDGLTILAIDNEPTILEGMQMLLTGWGCDVITA 1073
            ++ +P+  ++ + + +A PS  +    L G+ +L IDNE  IL G++ LL+ W C+VI A
Sbjct: 997  SITVPLGETVRQPQVKALPSLLQ---PLSGIKVLCIDNEEAILAGLESLLSRWQCEVICA 1053

Query: 1074 ANAQGAIEAVRHRRKKPDVALVDYHLDGG-HGIEAIMSLRWKLGK-IPAVLITADRSKKV 1131
             +   A   +  +   PD+ L D+HLD G +G++A+  +R   GK +P +LITA+  K++
Sbjct: 1054 KDLADARIKLGLKGVAPDIVLADFHLDDGQNGVDAMDGIRSLYGKDLPGILITANTRKEL 1113

Query: 1132 RDAARAADMEILNKPLKPAALRAILA 1157
             +  +      + K +KPAALRA+++
Sbjct: 1114 VEDVQRRGYHYMAKMIKPAALRALIS 1139