Pairwise Alignments

Query, 878 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 569 a.a., mechanosensitive ion channel protein MscS from Vibrio cholerae E7946 ATCC 55056

 Score =  123 bits (308), Expect = 4e-32
 Identities = 88/304 (28%), Positives = 147/304 (48%), Gaps = 18/304 (5%)

Query: 550 KPERVELIGVLASGLLKLQLFVVAAFLIVGSWGTSTADMMETVERVSFGVRIGNATITLW 609
           K +  ++ G +   LL  Q+     F IV  W  S  + + +           NA   L+
Sbjct: 259 KRQIFQVTGSITQDLLNTQV----VFSIVRHWSNSLVNWLAS-----------NAVQHLF 303

Query: 610 SVVYAVLLLLVSLAAARGLQKWVSSALLPRT-GLEPSLQSSIATIVGYVGTIVAVMVAMG 668
            +   +L+LL +   A+  +  V SA+  +   +   +Q    ++ G V  ++ ++V + 
Sbjct: 304 QLFIFLLILLAAKGGAKVTRTVVRSAVNSKNIRISHLMQDFFVSMSGKVVWVIGILVGLS 363

Query: 669 QLGLNLENIALVAGALSVGIGFGLQSIVSNFVSGLILLAERPIRVGDTINVKGEEGYVRR 728
           Q+GLNL  +    G   V IGF LQ  +SNF +G++LL  RP  VGD ++  G +G V  
Sbjct: 364 QIGLNLAPVLTGFGIAGVIIGFALQDTLSNFAAGMMLLIYRPFDVGDFVHAGGVDGKVSH 423

Query: 729 ISVRSTEIETFERATVIVPNADLITGMVKNWTHSNTTGRIIVAVTVSYDSDPEEVRDILV 788
           +S+ +T I TF+   +IVPN+ +   ++KN TH     R+ +   + Y  D  +   +L 
Sbjct: 424 MSLVNTTIRTFDNQIIIVPNSKIWGDVIKNVTHERIR-RVDMVFGIGYSDDLLKAEAVLT 482

Query: 789 GCACDHPQVLQTPPPRVFLMKFADAGIVFELRCVVANVDYALTVKSDLHFQVLSRFRKAG 848
                HP VL+TP P + +     + I F +R  V   DY   V  D+  +V  RF + G
Sbjct: 483 DIVKSHPAVLKTPEPNIKVHTLNTSSIDFIVRPWVKTDDY-WDVYWDVTKEVKLRFDREG 541

Query: 849 VSMP 852
           +S+P
Sbjct: 542 ISIP 545