Pairwise Alignments

Query, 438 a.a., C4-dicarboxylate TRAP transporter large permease protein DctM from Xanthobacter sp. DMC5

Subject, 465 a.a., C4-dicarboxylate transport protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  191 bits (485), Expect = 4e-53
 Identities = 131/454 (28%), Positives = 222/454 (48%), Gaps = 38/454 (8%)

Query: 13  LLVFLIAILASGVWIALGLGLVGLLAMVLTTPVPIGQVLATTVWSASASWTLAALPLFIW 72
           L   L   +  G+ IA+ LG   +L ++  +   +  V      S+S  +TL A+P FI 
Sbjct: 6   LFCVLFICMFLGMPIAIALGFSSMLTILFFSNDSLASVALKLYESSSEHYTLLAIPFFIL 65

Query: 73  MGEILFRTRLSEEMFRGLAPWLQWLPGRLLHVNVIGCGIFAAVSGSSAATCATIGKIALP 132
               L    ++  +       +  + G L   +V+ C +FAAVSGSS AT A IG I + 
Sbjct: 66  SSAFLSTGGVARRIIDFAMDCVGHIRGGLAMASVMACMLFAAVSGSSPATVAAIGSIVIV 125

Query: 133 ELDKRGYDKGMSLGSLAGSGTLGLLIPPSIPMVVYAVTANVSVLQVFLAGFLPGLLVMGL 192
            + K GY +  + G +  SGTLG+LIPPSI M+VYA    VSV ++F+AG +PGLL+  L
Sbjct: 126 GMVKAGYPEKFASGVITTSGTLGILIPPSIVMLVYAAATEVSVAKIFMAGLVPGLLLGFL 185

Query: 193 YSGYIMLWSLLNPGRTPPRDPHMPFAEKLRQSAKLVPCLLLIAAVFLSLVLGIATATECA 252
               I + + +   +  P  P   F +    SAK +  L LI  V  S+  G+A+ TE +
Sbjct: 186 IMVVIYIVARI---KNLPSIPFPGFKKLGVSSAKAIGGLALIFIVLGSIYGGVASPTEAS 242

Query: 253 AWGVTGALALAWWS-------GTLTWKTLIESVMSA------------------------ 281
           A     A  +A +          + W+   E++ SA                        
Sbjct: 243 AVACVYAYFIAVFGYRDIGPLKNVAWRNPNEAIPSAIARNLGHMVLGLIKTPIDKEIRHV 302

Query: 282 ----TRLSCMIMLIIAGAAFTTAAMAYTGIPVALAEWVQGLNLTPGKLALALTVMYIILG 337
                ++S M++ IIA A      +    IP  +AE++ G+ L      + + ++ +  G
Sbjct: 303 VRDGAKVSIMLLFIIANAMLFAHVLTTERIPHIIAEYIVGMGLPAWGFLIIVNLLLLAAG 362

Query: 338 CLVDGISMIVLTAVIVLPMVKQAGFDLVWFGVYLVIHVEMAQITPPVGFNLFVLQNMSGR 397
             ++  +++++ A I+ P+  Q G D +  G+ +V+++E+  +TPPVG NLFV   ++GR
Sbjct: 363 NFMEPSAIVLIMAPILFPIATQLGIDPIHLGIIMVVNMEIGMLTPPVGLNLFVTSGITGR 422

Query: 398 DTFSVAKAAFPFFILLNIAVIIITTFPEIALVLP 431
           +   V ++  P+ + +   +++IT  P+I+L LP
Sbjct: 423 NIGWVIQSVLPWLVFMLAFLMLITYVPQISLFLP 456