Pairwise Alignments

Query, 568 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

 Score = 45.4 bits (106), Expect = 8e-09
 Identities = 50/190 (26%), Positives = 80/190 (42%), Gaps = 15/190 (7%)

Query: 369 VLCAGPPGVGKTLTAEVYSEIIQRPLYRVHSGQ-LGLDVAHMEQALKDALTRAQRWG-AV 426
           VL AGPPG GKTL A+  +       Y ++  + +   V   E+ L+     A+    ++
Sbjct: 214 VLLAGPPGTGKTLLAKAVANEAGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSI 273

Query: 427 MLIDEADVYIKRRQDNLTMNAVVGVFLRVLEYFNGL-------LFLTTNRVDDIDEAI-- 477
           + IDE D    +R D  +      +  ++L   +GL       +   TNR D ID A+  
Sbjct: 274 IFIDEIDAVAPKR-DEASGEVERRMVAQLLTLMDGLESRGQLVILAATNRPDSIDMALRR 332

Query: 478 VSRCIALIKYHSPGPDDRRKIWRVMCDQFGL---ILSNELIDTLVEMFPETSGRDIKGLA 534
             R    I    P    R +I ++      L      +++I  L E+  E     I+ L 
Sbjct: 333 PGRLDREITIGIPDRHGRNEILQIHTRNMPLQPDYEKSDVISILNELVGEYDRSKIESLV 392

Query: 535 KLVAKYCSQK 544
           KLV K  S++
Sbjct: 393 KLVEKASSEE 402



 Score = 39.3 bits (90), Expect = 6e-07
 Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 15/183 (8%)

Query: 369 VLCAGPPGVGKTLTAEVYSEIIQRPLYRVHSGQL-GLDVAHMEQALKDALTRA-QRWGAV 426
           VL  GPPG GKTL A+  +   +     V   ++    V   E+A+++   +A Q    V
Sbjct: 544 VLLFGPPGTGKTLLAKAVANESEANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTV 603

Query: 427 MLIDEAD-VYIKRRQDNLTMNAVVGVFLRVLEYFNGL-------LFLTTNRVDDIDEAIV 478
           +  DE D V  KR  D  +      V  ++L   +GL       +   TNR D +D+A++
Sbjct: 604 IFFDEIDSVAPKRGMDFGSSGVTEKVVNQLLTELDGLEEPKDVVIIAATNRPDILDQALL 663

Query: 479 --SRCIALIKYHSPGPDDRRKIWRVMCDQFGLILSNEL-IDTLVEMFPETSGRDIKGLAK 535
              R   ++    P    R +I++V     G+ +  ++ ++ L +     +G DI+ + +
Sbjct: 664 RPGRLDRIVLVPIPNETARLEIFKVHTK--GMPIGKDVNLEKLAKETKGYTGADIEAVCR 721

Query: 536 LVA 538
             A
Sbjct: 722 EAA 724