Pairwise Alignments

Query, 436 a.a., N-acetylmuramoyl-L-alanine amidase AmiC from Xanthobacter sp. DMC5

Subject, 463 a.a., N-acetylmuramoyl-L-alanine amidase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  158 bits (400), Expect = 3e-43
 Identities = 120/397 (30%), Positives = 188/397 (47%), Gaps = 28/397 (7%)

Query: 26  LILFTFVAVVACPAWAQGEGSAPALAPALAREARLAGDAKRTRLIVDLDRAPAFRAFTLA 85
           L+L TF AV A              A       R+    + TR++ DL   P +  FTL 
Sbjct: 13  LLLCTFFAVAA-------------QAANQLESVRIWAAPESTRIVFDLSEVPNYSYFTLD 59

Query: 86  NPPRVILDLSDVTFALKPDAGQLRRGLVTAYRFGVF-APGKARMVLEVSGPVAIDKAFVL 144
            P R+++DL   +  L          LV   R       G  R+V+++  P+     F L
Sbjct: 60  GPNRLVVDLKKASTKLNLKNVDNNSKLVKGIRVSKSPTKGDLRLVIDLVKPLN-PNLFSL 118

Query: 145 DAVDDQPARLVVDLVKADADAFARSIATEAEQRTALPAAAVAAPPAGDTRPVIVIDPGHG 204
                   RLVVDL    A A   ++++   ++    +   +         VI ID GHG
Sbjct: 119 PVTAPYGNRLVVDLEDKSATAELSAVSSTPVKKNVTQSVQASRDI------VIAIDAGHG 172

Query: 205 GIDSGTSGYSAFVEKTIVLETALALRERLEKAGGYRVVLTRSTDTFIPLADRVRIARTNR 264
           G D G+ G S   EK +V E +  L  ++    G R V+ RS D F+ L  R  +AR ++
Sbjct: 173 GDDPGSIGPSGLYEKKVVFEISKRLASKINDTPGMRAVMIRSGDYFVNLNRRSELARNSK 232

Query: 265 ADLFISIHADALARGDGRARGASVYTLSETASDTESAH-LADKENKADLIAG----VDLS 319
           ADL ISIHADA        RGASV+ LS   +++E    L  KE  ++L+ G    +  +
Sbjct: 233 ADLLISIHADAFT--SPNPRGASVWVLSMRRANSEIGRWLEQKEKHSELLGGAGEIIQNT 290

Query: 320 DETDEVAGILVDLAQRETRNFSALFARTLVGSMKAATRMHGTPLKSAGFRVLRAHDVPSV 379
           D    +A  L+D++   +       A  ++  + A T +H +  +SA F VL++ D+PS+
Sbjct: 291 DNEQYLAMTLLDMSMNSSMAIGHSVAGDILKDLGAVTELHKSRPESASFAVLKSPDIPSI 350

Query: 380 LVELGYMSSPDDLKQLTSEAGRDRMADAIAAGVTQFF 416
           LVE G++S+P + + L+S   ++ +A AI  GV ++F
Sbjct: 351 LVETGFISNPKEERLLSSSRHQESIATAIYKGVNRYF 387