Pairwise Alignments
Query, 1095 a.a., Ribonuclease E from Xanthobacter sp. DMC5
Subject, 1052 a.a., ribonuclease E from Vibrio cholerae E7946 ATCC 55056
Score = 387 bits (995), Expect = e-111
Identities = 265/789 (33%), Positives = 390/789 (49%), Gaps = 100/789 (12%)
Query: 373 IQEVIRRRQVMLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNAVDR 432
I++V+ Q ++VQ+ KEERG+KGAALTT++SLAG Y VLMPN R GGISR+I +R
Sbjct: 90 IKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGD-ER 148
Query: 433 KRLKEVVQDLEVPEGMGIILRTAGANRTKTEIKRDFEYLLRLWETVREMTLSSTAPSLVY 492
LK + LE+P+GMG+I+RTAG ++ E++ D LL+ W +++ + S+ AP L++
Sbjct: 149 TELKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDSNPAPFLIH 208
Query: 493 EEGSLIKRAIRDLYNKDIDDIHVAGEEGFREARDFMRMLMPSHAKSVMPYREPQPIFARY 552
+E ++I RAIRD +DI +I + + A + +R++ P V Y P+F+ +
Sbjct: 209 QESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHF 268
Query: 553 GVEQQLDAMFSPVVQLKSGGYIVINPTEALVSIDVNSGRATREHHIEDTALKTNLEASEE 612
+E Q+++ F V+L SGG IVI+PTEAL SID+NS RAT+ IE+TAL TNLEA++E
Sbjct: 269 QIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATKGGDIEETALNTNLEAADE 328
Query: 613 IARQLRLRDLAGLIVIDFIDMEEKRNNRSVERKLKDCLKNDRARIQIGRISHFGLLEMSR 672
IARQLRLRDL GL+VIDFIDM R+ R VE +L++ ++ DRAR+QIGRIS FGLLEMSR
Sbjct: 329 IARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMSR 388
Query: 673 QRIRTGVLESSIEVCPHCGGTGHVRSAASVSLQLLRALEEQLLRSQTHNLIARTRTEVAL 732
QR+ + E+S +CP C GTG +R S++L +LR +EE+ L+ T ++A +A
Sbjct: 389 QRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEALKDNTSQVLAVVPVSIAS 448
Query: 733 YVLNQKRAHLRELEERFSVTLSVAADESV-TGHQPFI-IEKGD----------------- 773
Y+LN+KR + +E+ V +++ + + T H I + +G+
Sbjct: 449 YLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREGEEQDVLSYLIPKKLEAMK 508
Query: 774 ------------------------LAAPAPA--APRPSTVVQPDSILPDEDFLEED-EEE 806
AAPA A AP P +P + + +
Sbjct: 509 EAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTPKPKAEPQPVAEVQQPAQPGFFSR 568
Query: 807 IVEEAETEAEAEAEASEGNGERTDDAGR-KRRRRRRRRRGDREEGRESAEGAEGEEEDDT 865
+ + + A EA++ T ++ + K RR R R DR G EE++
Sbjct: 569 VFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRERNDRNNDRRRNPRDKNRRRGNEENNE 628
Query: 866 SAEAAEAQDGTRDENAREDDERDDEERGEDERADGERSDDENGDRRRRRRGRRGGRRNRR 925
+ T + N + + + +ERGE ER+D +R R R RRN+R
Sbjct: 629 RNDKE-----TSNSNRKPQERKPKQERGE----RNERND--RNERPETERPERQDRRNKR 677
Query: 926 ERDDDAPGSADGESDGSEESDDEQPVAAEAEVAAA--------------PVTAPTFAEAP 971
+ A G +E + + V + E AA V AE
Sbjct: 678 DESKTAKLLEQGRQLAAEAQQEVKAVEPKEEKAAVVKERRQRRKLSKQIRVKDQLAAEEL 737
Query: 972 AEVRAEPVAEAPATPAPTPEPVT----ESAE----------------------AAPRRRR 1005
+ PV A PAP PVT +SA+ + RRRR
Sbjct: 738 DNLSTAPVDNAFDAPAPVNLPVTDDFADSAQEDNEQDDQKQRRNRRSPRHLRASGQRRRR 797
Query: 1006 STIREKAPVILSEGGIATPVAPVAAEAPS-EPAAEPAPELAATEAAAPEAAAPAPAAEPA 1064
R P L +GG+A+P + P + A P E A AA
Sbjct: 798 GRDRRPNPFRLRKGGVASPEMAMGKVMPRYDLAPRPQSRHETAEGAQHVTHVTPTAATAV 857
Query: 1065 PAPETPAAP 1073
E AAP
Sbjct: 858 VESEKVAAP 866
Score = 82.4 bits (202), Expect = 2e-19
Identities = 37/76 (48%), Positives = 52/76 (68%)
Query: 4 KMLIDATHPEETRVVVVRGNRVEEFDYESASRKQLRGNIYLAKVTRVEPSLQAAFIEYGG 63
+MLI+AT EE RV +V G R+ + D ES + + NIY ++TR+EPSL+AAF++YG
Sbjct: 3 RMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGA 62
Query: 64 NRHGFLAFSEIHPDYY 79
RHGFL EI +Y+
Sbjct: 63 ERHGFLPLKEIAREYF 78
Score = 29.3 bits (64), Expect = 0.002
Identities = 30/144 (20%), Positives = 50/144 (34%), Gaps = 9/144 (6%)
Query: 93 EERAARLAEDEADLKDRRRERSRAKRSQPDQSISTAAEPVEHPAPEAGEAPAADGFEAAE 152
+ER + E + ++ R ER +R + + E E G AA+ + +
Sbjct: 642 QERKPKQERGERNERNDRNERPETERPERQDRRNKRDESKTAKLLEQGRQLAAEAQQEVK 701
Query: 153 DAAPVQDTATEAPFETPEASSGHHAEPMSALVAPAEAAEAAAAVVEAAIDAPLGTPLP-- 210
P ++ A L A E + A V+ A DAP LP
Sbjct: 702 AVEPKEEKAAVVKERRQRRKLSKQIRVKDQLAAE-ELDNLSTAPVDNAFDAPAPVNLPVT 760
Query: 211 ------APQEQASDDEEALRRREA 228
A ++ DD++ R R +
Sbjct: 761 DDFADSAQEDNEQDDQKQRRNRRS 784