Pairwise Alignments

Query, 1095 a.a., Ribonuclease E from Xanthobacter sp. DMC5

Subject, 889 a.a., Ribonuclease E and G (NCBI) from Rhodospirillum rubrum S1H

 Score =  624 bits (1610), Expect = 0.0
 Identities = 380/812 (46%), Positives = 498/812 (61%), Gaps = 57/812 (7%)

Query: 324  RDKDEDEDEDDSDVDQIDEEEEIEHLGADEDALEEVPERAPQRRARSYKIQEVIRRRQVM 383
            R+K   E+  ++  D  DE + +E LG DE        RA  R +RSYKIQEVI+RRQ+M
Sbjct: 86   REKLIAEEALEAAADDDDEADSVETLGGDEAEDSAPAPRAKSRVSRSYKIQEVIKRRQIM 145

Query: 384  LVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNAVDRKRLKEVVQDLE 443
            LVQVVKEERGNKGAALTTYLSLAGRY V MPNT RGGG+SRKIT+A DRKRLK ++ +L 
Sbjct: 146  LVQVVKEERGNKGAALTTYLSLAGRYCVFMPNTTRGGGVSRKITSATDRKRLKSIMGELI 205

Query: 444  VPEGMGIILRTAGANRTKTEIKRDFEYLLRLWETVREMTLSSTAPSLVYEEGSLIKRAIR 503
             P+G  +ILRTAG+ R++ EI+RD +YLLR W+++R+ TL+S AP L++EEGSLIKRAIR
Sbjct: 206  GPKGSAVILRTAGSERSRAEIRRDHDYLLRTWDSIRQTTLASRAPCLIHEEGSLIKRAIR 265

Query: 504  DLYNKDIDDIHVAGEEGFREARDFMRMLMPSHAKSVMPYR-EPQPIFARYGVEQQLDAMF 562
            D+Y++DI++I V G+ G+R A+DFM+ML PSHAK V PY+ E  P+F RY VE Q+DAM 
Sbjct: 266  DIYSRDIEEILVEGDAGYRTAKDFMKMLTPSHAKKVQPYKDEIMPLFHRYQVESQMDAMH 325

Query: 563  SPVVQLKSGGYIVINPTEALVSIDVNSGRATREHHIEDTALKTNLEASEEIARQLRLRDL 622
            SP+ QL+SGGY+VIN TEALV+IDVNSGR+TRE +IE+TA KTNLEA++EIARQLRLRDL
Sbjct: 326  SPIAQLRSGGYLVINQTEALVAIDVNSGRSTRERNIEETAYKTNLEAADEIARQLRLRDL 385

Query: 623  AGLIVIDFIDMEEKRNNRSVERKLKDCLKNDRARIQIGRISHFGLLEMSRQRIRTGVLES 682
            +GLIVIDFIDM++ R+N +VER++KD L+NDRARIQ+GRISHFGLLEMSRQR+R  ++E+
Sbjct: 386  SGLIVIDFIDMDDPRSNANVERRVKDALRNDRARIQLGRISHFGLLEMSRQRLRPSLMET 445

Query: 683  SIEVCPHCGGTGHVRSAASVSLQLLRALEEQLLRSQTHNLIARTRTEVALYVLNQKRAHL 742
            S + CPHC G+G +RS  S ++ +LR +EE+ +R ++  +     T +ALY+LN KR  L
Sbjct: 446  SFQPCPHCHGSGSLRSVESTAIHILRIIEEEGVRRRSSEVTVTVPTAIALYILNNKRTVL 505

Query: 743  RELEERFSVTLSVAADESVT----GHQPFIIEKGDLAAPAPAAPRPSTVVQPDSILPDED 798
              +E R+   + +  D+++            E+  L A   AAP P+    P + LP  +
Sbjct: 506  AAIEARYDFQVFLLGDDTLIVPDYRMDRVKAEREGLDALPAAAPPPTA---PVAALPAPE 562

Query: 799  FLEEDEEEIVEEAETEAEAEAEASEGNGERTDDAGRKRRRRRRRRRGDREEGRESAEGAE 858
             LE+++E   +E   E EA AE +  NG   D  GRKRRRRRRRRR D ++G E     E
Sbjct: 563  VLEDEDE---DEGTVEDEAFAEENGQNGADADGQGRKRRRRRRRRRKD-QDGVE----IE 614

Query: 859  GEEEDDTSAEAAEAQDGTRDENAREDDERDD--EERGED-ERADGERSD-DENGDRRRRR 914
            G   DD         D T DE A ++ E  D  E+ G++ + ADG  SD D    RRRRR
Sbjct: 615  GSSVDDEEGAPEGTADSTEDEGADDEGETGDEAEDTGDELDPADGSLSDRDGQSRRRRRR 674

Query: 915  RGRRGGR----------------RNRRERDDDAPGSADGESDGSEESDDEQPVAAEAEVA 958
            RGRRG R                 +    DDD+  SA+ + D + E +      A++  A
Sbjct: 675  RGRRGRRDDTGNGLPEPAVPASTADTLPLDDDSIESAEIDDDPTAEDEIISSTDADSAPA 734

Query: 959  AAPVTAPTFAEAPAEVRAEPVAEAPATPAPTPEP------VTESAEAAPRRRRSTIREKA 1012
                 A    E   E R  P    P       E           AEA P    + +    
Sbjct: 735  GEDSAAAITDELGREGRRPPRRRRPRRKDRGVETNRAIALDASDAEAGPATAETDLAAFD 794

Query: 1013 PVILSEGGIATPVAP--VAAEAPSEPA-AEPAPELAATEAAAPEAAAPAPAAEPAPAP-- 1067
                +E   A P+    +  E P+E A AE   E A T+     A    P A  AP P  
Sbjct: 795  DAPDAEAPFAEPLGDERLLDETPAEIAEAEAEVETAETDIDRDPADGEPPTAPVAPPPVA 854

Query: 1068 --ETPAAPAEEAAPPA------KPRS-GWWQR 1090
              +TP  PA  AAPPA      +PR  GWW +
Sbjct: 855  VVKTP-DPAAAAAPPAAVPSSDQPRRVGWWSK 885



 Score =  157 bits (396), Expect = 4e-42
 Identities = 78/106 (73%), Positives = 90/106 (84%), Gaps = 1/106 (0%)

Query: 1   MANKMLIDATHPEETRVVVVRGNRVEEFDYESASRKQLRGNIYLAKVTRVEPSLQAAFIE 60
           M  +MLIDA HPEETRVVV+ G R++EFD E++++KQL+GNIYLAKV RVEPSLQAAF+E
Sbjct: 1   MTKRMLIDANHPEETRVVVLDGTRLDEFDVETSTKKQLKGNIYLAKVVRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLAFSEIHPDYYQIPVADRLALIEEEE-RAARLAEDEAD 105
           YGGNRHGFLAF+EIHPDYYQIPVADR  LI EE   AA   +DEAD
Sbjct: 61  YGGNRHGFLAFNEIHPDYYQIPVADREKLIAEEALEAAADDDDEAD 106