Pairwise Alignments

Query, 1095 a.a., Ribonuclease E from Xanthobacter sp. DMC5

Subject, 920 a.a., ribonuclease, Rne/Rng family from Dechlorosoma suillum PS

 Score =  449 bits (1154), Expect = e-130
 Identities = 303/791 (38%), Positives = 422/791 (53%), Gaps = 111/791 (14%)

Query: 373  IQEVIRRRQVMLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNAVDR 432
            I+E ++  Q ++VQV K+ERGNKGAALTT++SLAGRY VLMPN  RGGG+SR++    +R
Sbjct: 88   IKEALKEGQEVIVQVEKDERGNKGAALTTFVSLAGRYLVLMPNNPRGGGVSRRVEGD-ER 146

Query: 433  KRLKEVVQDLEVPEGMGIILRTAGANRTKTEIKRDFEYLLRLWETVREMTLSSTAPSLVY 492
              L++V+  L+VP GM +I RTA   R   E++ D  YLL+LWE +     S + P L+Y
Sbjct: 147  AELRDVMDQLQVPGGMSLIARTAAIGRNAEELQWDLNYLLKLWEAIEGAATSQSGPFLIY 206

Query: 493  EEGSLIKRAIRDLYNKDIDDIHVAGEEGFREARDFMRMLMPSHAKSVMPYREPQPIFARY 552
             EGSL+ RAIRD +  DI +I +  +E F +AR FM  +MP++   V  YR+  P+F+R+
Sbjct: 207  LEGSLVIRAIRDYFQPDIGEILIDTDEIFEQARSFMGTVMPANENRVKLYRDDVPLFSRF 266

Query: 553  GVEQQLDAMFSPVVQLKSGGYIVINPTEALVSIDVNSGRATREHHIEDTALKTNLEASEE 612
             +E Q+++ +S  V L SGG IVI+ TEALVS+DVNSGR+TR   IE+TALKTN EA++E
Sbjct: 267  QIEHQIESAYSRQVNLPSGGAIVIDHTEALVSVDVNSGRSTRGQDIEETALKTNQEAADE 326

Query: 613  IARQLRLRDLAGLIVIDFIDMEEKRNNRSVERKLKDCLKNDRARIQIGRISHFGLLEMSR 672
            IARQLRLRDL GLIVIDFIDME ++N R VE +L+D L++DRAR+Q+G+IS FGL+E+SR
Sbjct: 327  IARQLRLRDLGGLIVIDFIDMESQKNQREVENRLRDALRHDRARVQMGKISRFGLMELSR 386

Query: 673  QRIRTGVLESSIEVCPHCGGTGHVRSAASVSLQLLRALEEQLLRSQTHNLIARTRTEVAL 732
            QR+R  + E+S   CP C GTGH+RS  S +L +LR LEE+ ++  T  +  +   +VA 
Sbjct: 387  QRLRPALAETSYIPCPRCTGTGHIRSTESAALHILRILEEEAMKDNTAAVHTQVPVDVAT 446

Query: 733  YVLNQKRAHLRELEERFSVTLSVAADESVTGHQPFI-------IEKGDLAAPA------P 779
            ++LN+KR  ++ +E R  VT+ +  +  +      I       +   D+  P+      P
Sbjct: 447  FLLNEKRPDIQAIELRHKVTILLIPNVHLETPAHTIQRLRHDDLNNEDVQQPSYRMMEMP 506

Query: 780  A------APRPSTVVQPDSILPDEDFLEEDEEEIVEE----------------------- 810
            A      A   S   QP      +    E    +V E                       
Sbjct: 507  AEEVKQLANAQSEARQPRQEAAIKHITPEQPAPVVAEKPAAAPVAKSEGIIGKIFSWFRG 566

Query: 811  ---AETEAEAEAEASEGNGERTDDAGRKRRRRRRRRRGDREEGRESAEGAEGEEEDDTSA 867
                E   E  A   +G G+R++  GR  +R R R     + GR   EGAEG    +   
Sbjct: 567  NKTVEPTPEPAATPRKGRGQRSEGQGRGEQRGRGR---GEQRGRGRGEGAEGRNGGERGE 623

Query: 868  EAAEAQDGTRDENAREDDERDD-EERGEDERADGER-----SDDENGDRRRRRRGRRGGR 921
                 +  T+ +NARE   R+   +RG+    +GER     +D+E G+++  +R  R  R
Sbjct: 624  RPTRGE--TQGDNAREQQPREGRRQRGDRGDRNGERNNAVQADNERGEQQNEQRKERRER 681

Query: 922  RNRRERDDDAPGSADGESDGSEESDDEQPVAAEAEV--AAAPVTAPTFAEAPAEV----- 974
            + RRER              + E   +Q VAA+A+     A  TAP  A    +      
Sbjct: 682  QPRRER--------------NSEDKAQQAVAAQADALNTQAAGTAPEQAAPQGDEEGGRG 727

Query: 975  ----------RAEPVAEAPATPAPTPEPVTESAEAAPRRRRSTIREKAPVILSE-GGIAT 1023
                      R E   E  A        VTE ++           E+APVI +    +A 
Sbjct: 728  RRGRRNNRRDRGERRQENGAEGEVQQNAVTEVSQ-----------EQAPVIAAAVVEVAN 776

Query: 1024 PVAPVA-----AEAPS----EPAAEPAPELAATEAAAPEAAAPAPAAEPAPAPETPAAPA 1074
            PV PVA     A AP+    E AAE AP +    AAA EAA   P A P  A E   AP 
Sbjct: 777  PVEPVAVAAVEAVAPTVAVVESAAEVAPAVEEAPAAAVEAA--IPEAAPVVAVEEVVAPV 834

Query: 1075 EEAAPPAKPRS 1085
            EE   P  PR+
Sbjct: 835  EEQVIPTPPRA 845



 Score = 88.6 bits (218), Expect = 2e-21
 Identities = 45/104 (43%), Positives = 66/104 (63%), Gaps = 4/104 (3%)

Query: 4   KMLIDATHPEETRVVVVRGNRVEEFDYESASRKQLRGNIYLAKVTRVEPSLQAAFIEYGG 63
           +ML +AT  EE RV +V G ++ + D ESA+++Q + NIY   +TR+EPSL+A F+ YG 
Sbjct: 3   RMLFNATQAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKGVITRIEPSLEACFVNYGE 62

Query: 64  NRHGFLAFSEIHPDYYQIPVADRL----ALIEEEERAARLAEDE 103
            RHGFL F E+   Y+Q  V +R     AL E +E   ++ +DE
Sbjct: 63  ERHGFLPFKEVSRSYFQPGVDNRASIKEALKEGQEVIVQVEKDE 106