Pairwise Alignments

Query, 1095 a.a., Ribonuclease E from Xanthobacter sp. DMC5

Subject, 1041 a.a., Ribonuclease E from Enterobacter sp. TBS_079

 Score =  377 bits (967), Expect = e-108
 Identities = 247/681 (36%), Positives = 362/681 (53%), Gaps = 64/681 (9%)

Query: 373 IQEVIRRRQVMLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNAVDR 432
           I++V+R  Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN  R GGISR+I    DR
Sbjct: 90  IKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGD-DR 148

Query: 433 KRLKEVVQDLEVPEGMGIILRTAGANRTKTEIKRDFEYLLRLWETVREMTLSSTAPSLVY 492
             LKE +  LE+P+GMG+I+RTAG  ++   ++ D  + L+ WE +++   S  AP L++
Sbjct: 149 TELKEALASLELPDGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIQKAAESRAAPFLIH 208

Query: 493 EEGSLIKRAIRDLYNKDIDDIHVAGEEGFREARDFMRML-MPSHAKSVMPYREPQPIFAR 551
           +E ++I RA RD   +DI +I +   +    AR  +  L  P     +  Y    P+F+ 
Sbjct: 209 QESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFTSKIKLYTGEIPLFSH 268

Query: 552 YGVEQQLDAMFSPVVQLKSGGYIVINPTEALVSIDVNSGRATREHHIEDTALKTNLEASE 611
           Y +E Q+++ F   V+L SGG IVI+ TEAL +ID+NS RATR   IE+TA  TNLEA++
Sbjct: 269 YQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARATRGGDIEETAFNTNLEAAD 328

Query: 612 EIARQLRLRDLAGLIVIDFIDMEEKRNNRSVERKLKDCLKNDRARIQIGRISHFGLLEMS 671
           EIARQLRLRDL GLIVIDFIDM   R+ R+VE +L++ ++ DRARIQI  IS FGLLEMS
Sbjct: 329 EIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMS 388

Query: 672 RQRIRTGVLESSIEVCPHCGGTGHVRSAASVSLQLLRALEEQLLRSQTHNLIARTRTEVA 731
           RQR+   + ESS  VCP C GTG VR   S+SL +LR +EE+ L+  T  + A     +A
Sbjct: 389 RQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTKEVHAIVPVPIA 448

Query: 732 LYVLNQKRAHLRELEERFSVT--LSVAADESVTGHQPFI-IEKG---------------- 772
            Y+LN+KRA +  +E R      + V  D+  T H   + + KG                
Sbjct: 449 SYLLNEKRAAVSAIESRQGDVRCIIVPNDQMETPHYHVLRVRKGEETSTLSYLLPKLHEE 508

Query: 773 DLAAPA---------PAAPRPSTVVQPDSILPDEDFLE--------EDEEEIVEEAETE- 814
           ++A P+         P  P  +T + P++  P E  LE        +  E +  +A+ E 
Sbjct: 509 EMALPSDEEPAERKLPEQPALATFIMPEA--PPETALEKPVTKPVAQKPEAVAVKAQPEQ 566

Query: 815 ---------------AEAEAEASEGNGERTDDAGRKRRRRRRRRRGDREEGRESAEGAEG 859
                          A  E +  E   E   +A  +R++ RR+R+ +R +  +  +  E 
Sbjct: 567 PGLLSRLFGALKKMFAGEEVQQPEQPKEAPKEAKPERQQDRRKRQNNRRDRNDRNDRNER 626

Query: 860 EEEDDTSAEAAEAQDGTRDENAREDDERDDEERGEDERADGERSDDENGDRRRRRRGRRG 919
            +    + E  E ++  R  N RE   ++ E+R   ++A  E    +  D ++ RR    
Sbjct: 627 RDNRSDNNEGREQREDNR-RNRREKQPQNVEDREIRQQAGDESEKSKQRDEQQPRR---- 681

Query: 920 GRRNRRERDDDAPGSADGESDGSEESDDEQPVAAEAEVAAAPVTAPTFAEAPAEVRAEPV 979
             R+RR  D+      + ++   EE  ++Q    E      P            V A PV
Sbjct: 682 -ERSRRRNDEKRQAQQEVKNLNREEPVEQQESEQEERTQVMPRRKQRQLSQKVRVGALPV 740

Query: 980 AEAPATPAPTPE--PVTESAE 998
            E    PA   +  P T+ A+
Sbjct: 741 EETVIVPAEVSDTAPGTQLAK 761



 Score = 85.9 bits (211), Expect = 1e-20
 Identities = 39/76 (51%), Positives = 53/76 (69%)

Query: 4  KMLIDATHPEETRVVVVRGNRVEEFDYESASRKQLRGNIYLAKVTRVEPSLQAAFIEYGG 63
          +MLI+AT  EE RV +V G R+ + D ES   +Q + NIY  K+TR+EPSL+AAF++YG 
Sbjct: 3  RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62

Query: 64 NRHGFLAFSEIHPDYY 79
           RHGFL   EI  +Y+
Sbjct: 63 ERHGFLPLKEIAREYF 78



 Score = 41.2 bits (95), Expect = 4e-07
 Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 13/122 (10%)

Query: 283 EEDSDEASEEKAPEETAREERSDDEEQPRSRRHRGRRHDRKRDKDEDEDEDDSDVDQID- 341
           EE       ++AP+E   E + D  ++  +RR R  R+DR   +D   D ++    + D 
Sbjct: 584 EEVQQPEQPKEAPKEAKPERQQDRRKRQNNRRDRNDRNDRNERRDNRSDNNEGREQREDN 643

Query: 342 ------------EEEEIEHLGADEDALEEVPERAPQRRARSYKIQEVIRRRQVMLVQVVK 389
                       E+ EI     DE    +  +    RR RS +  +  R+ Q  +  + +
Sbjct: 644 RRNRREKQPQNVEDREIRQQAGDESEKSKQRDEQQPRRERSRRRNDEKRQAQQEVKNLNR 703

Query: 390 EE 391
           EE
Sbjct: 704 EE 705