Pairwise Alignments

Query, 410 a.a., Multidrug resistance protein MdtE from Xanthobacter sp. DMC5

Subject, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  144 bits (363), Expect = 4e-39
 Identities = 115/356 (32%), Positives = 171/356 (48%), Gaps = 28/356 (7%)

Query: 25  SAMLLAGCGQENPANAGEAPASKEATLARPVQVTTVSFRPRQTQKSFVGVVRARREIDLA 84
           SA+LLAGCG E P  +  AP  K A       +T +    R +  +F GVVRA +  DLA
Sbjct: 22  SALLLAGCG-EAPQISAPAPVVKPA-------LTEIVASQRASDLTFNGVVRAAQRADLA 73

Query: 85  FRVGGKVVQRLVEVGDRIEPGTVVARLDKEDLKLELESAKAEMQAATANLAQTTTEDTRY 144
           FR+ G++    V+ GD+++ G ++A LD  D K  LE+A+ E       L  T  E  R 
Sbjct: 74  FRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLE-------LKNTEQEYRRA 126

Query: 145 RALTAK-GAASNADLDRKSLAKEEAVGRLERAKRSLELAENRLSYADLVTDAAGVVVATS 203
           +A+  K  A S A+LD+ +   + A  R+E AKR LE       Y  +     GV+   +
Sbjct: 127 KAIFEKTQAISKAELDKVTNRYDLAKNRVEEAKRKLE-------YTQITAPFDGVISEKT 179

Query: 204 AEPGQVVASGQTIVRVARLDEKEALVSLP-ETALADARTADAVVTLWADPGRRIPAHLRE 262
            E    V + Q I+ +  L++ E  + +P    L+  R   A+  L A P ++    LR 
Sbjct: 180 IENFAQVQANQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKLRT 239

Query: 263 LSPQADVTSRTYPARFSLEGADG-TVALGMTA---TVTLRPKDQQQVARLPLSALIDRGH 318
            S Q    S+TY      E   G  V  GM+A    V  +P D+  +  LPL+AL+    
Sbjct: 240 YSTQPSSDSQTYSVVLGFEDLKGFRVMPGMSAKVIPVADKPADENTLITLPLTALVPDNQ 299

Query: 319 GPQVFVVDGATHAIVARPVEIAAYTGDEVLLSGGVAPGDAVVILGVQTLLPGQKVR 374
           G Q   V  A +    R V+I     D V+++  + PG+ V+I GV ++  G  VR
Sbjct: 300 GKQFVWVVNAQNQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTVR 355