Pairwise Alignments

Query, 292 a.a., Ribosomal RNA small subunit methyltransferase A from Xanthobacter sp. DMC5

Subject, 271 a.a., ribosomal RNA small subunit methyltransferase A from Vibrio cholerae E7946 ATCC 55056

 Score =  142 bits (358), Expect = 8e-39
 Identities = 102/266 (38%), Positives = 139/266 (52%), Gaps = 20/266 (7%)

Query: 18  GLSAQKSLGQNFLLDLNLTGRIARASGPLEDVTVVEVGPGPGGLTRAL-LALGAKRVIAI 76
           G  A+K  GQNFL D  +   I  A  P     +VE+GPG G +T  +   +    VI +
Sbjct: 8   GHKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPVGREVDKFTVIEL 67

Query: 77  ERDRRCMDALAEVAAHYP---GRLEVIEGDALKVDVRPLIG-EGEARVVANLPYNIATVL 132
           +RD      LAE   ++P    +L + EGDA++ D + L+    + RV  NLPYNI+T L
Sbjct: 68  DRD------LAERLRNHPELASKLTIHEGDAMRFDFKQLVKPNNKLRVFGNLPYNISTPL 121

Query: 133 LVGWLSTDPWPPWFSSLTLMFQKEVAERIVAEPGSKAYGRLAVLAGWRTKGRIAFDVAPS 192
           +        +      +  M QKEV  R+ A PG+KAYGRL V+A +  K     +V PS
Sbjct: 122 MFHLFE---FHRDIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPS 178

Query: 193 AFVPPPKVTSSVIHLVPRAEPLP---CALSALEKVTESAFGQRRKMLRQSLKTLGVDAQA 249
           AFVPPPKV S+V+ LVP  E LP    +L  L++V    F QRRK +R   K  G+    
Sbjct: 179 AFVPPPKVDSAVVRLVP-YEDLPHPATSLEWLDRVVREGFNQRRKTVRNCYK--GLAEPE 235

Query: 250 LLAAAGVEETARAEEIDVAGFVRLAN 275
            L   G+    R E + +A FV LAN
Sbjct: 236 TLETLGINPGMRPENLTLAQFVALAN 261