Pairwise Alignments

Query, 846 a.a., LPS-assembly protein LptD from Xanthobacter sp. DMC5

Subject, 765 a.a., organic solvent tolerance protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  108 bits (270), Expect = 1e-27
 Identities = 136/582 (23%), Positives = 231/582 (39%), Gaps = 107/582 (18%)

Query: 83  KMLVTADQLEYDYQKDTVSAVGNVQIYYDGSTLEARRVVLDRKANTLRAEGNARLKDKDG 142
           K+ + +D+ + +  K  +   G+V        + A   +LD+      A GN   +D + 
Sbjct: 51  KIRIASDRSKAEMGKQAIFT-GDVVFSQGDRHIAADEAILDQATEQFDANGNLVFQDSNF 109

Query: 143 KIVTADTLQLTQDFKQGFIDSLRLDTP-DNTHFAAVRADRTDGNITVFQNGIYTACEPCK 201
             VTAD+LQ      +  +   +        H  A +   T  N  +  N  +T C P  
Sbjct: 110 T-VTADSLQAQMRSNRATLTGAQYWLHGQQVHGDAEKLQITINNNLILTNTNFTTCPP-- 166

Query: 202 DDPSKPPLWQIKAKKIIHNDDEKMVYYEDAWVEFFGLPVAYFPYMSSPDPTVKRKTGFLM 261
           D+ S    W ++A+KI  N +E+     +A +    +PV Y PYM+ P  + KRKTGFL 
Sbjct: 167 DNVS----WLLEAEKIKINSEEEWGEIWNAKLRVADIPVFYIPYMTVP-VSDKRKTGFLY 221

Query: 262 PEFFSSSQIGYGVSVPFFWNIAPDRDLTLTPAFLTQQGVLMQAEWRQ---RLINGSYTIR 318
           P F +S+  G+ VS P++WNIAP+ DLT TP ++T +G+  + E+R       NG   + 
Sbjct: 222 PSFSTSTTNGFEVSAPYYWNIAPEYDLTFTPNYMTNRGLFTKTEFRYLAGEAQNGRLNLE 281

Query: 319 AAGIVQQNPQDFITTSNGITEVLPGYREDRGAVESTGAFALNKFWTFGWDGTVVSDRTFL 378
             G  Q          NG         + +GA++        K W    + T VSD  + 
Sbjct: 282 YLGSDQM--------LNGSPNRYLYNWQHQGAID--------KNWRVLANFTEVSDNNYF 325

Query: 379 RDYNLIPDATTTKTSTVYLTGQGDRSYFD--------LRGLYFLGLGVTDDQARQPIVGT 430
            D      +   + +   L+  G+ SYF+        ++ +  LG    +D+    ++  
Sbjct: 326 NDLK----SDVNRATDNQLSRIGEVSYFERDWDISTRVQDIKVLG----EDEKPYQVMPQ 377

Query: 431 LNYDKVFNNALWGGEAGFKVNLTSLTRQQADFIGTSELTSAIGSVGVPTGACTLWSPNAK 490
           +N++    +     + GF   LT+   Q  D + T+       S+ +P            
Sbjct: 378 VNFNYRAADFWNNLDFGFNSELTNFAHQDDD-VNTATRLHMAPSLTLP------------ 424

Query: 491 ECLLRGAPGDYT---RLSGDVYWKKTITDPLGQQWTPFVTARVDVASVNTSYLPASYQFG 547
              + G  G +T   +L    YW++                                   
Sbjct: 425 ---IHGPSGSFTSQLKLMQTNYWQE----------------------------------- 446

Query: 548 PTFPGQNPLQSGSDDLIRAMPAVGLDYKYPFIS----AESWGTQTIEPRAQVIIRPNESN 603
                 +   S  D + R +P V ++ +  F       E    QT+EP+ Q +    E  
Sbjct: 447 ---KNNSKFDSLDDTVSRTIPQVRINGQINFERFTELFEHNYRQTLEPQFQYLYVGYEDQ 503

Query: 604 IGKFPNEDAQSLVFDDTNLFEINKYSGYDRVEGGSRLNLGVT 645
            G    + AQ L  D   LF   ++SG DR+   +++ LG+T
Sbjct: 504 RGIGIYDTAQ-LQDDYFGLFRDRRFSGLDRIADANQVTLGIT 544