Pairwise Alignments

Query, 309 a.a., HTH-type transcriptional regulator TrpI from Xanthobacter sp. DMC5

Subject, 297 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  149 bits (377), Expect = 6e-41
 Identities = 101/295 (34%), Positives = 159/295 (53%), Gaps = 14/295 (4%)

Query: 9   LPSLVALRAFEATARHRSMSRAAEELCVTHGAVSRHVKALEATLGVPLLARRGTATDPTP 68
           LP L ALRAFE+ AR +S++ A++EL VTHGA+S+ ++ LE  LG  L  R     + T 
Sbjct: 5   LPPLNALRAFESAARLQSITLASKELHVTHGAISKQIRVLEDFLGFALFVRLHKKVELTD 64

Query: 69  EGQRLAEGLTTAFGVIHATL-----ERVRPGPLTLSCSASIMLCWLIPRMAGFHRRNPDV 123
           E +R    +  A   + +       +  RP  L ++   S+ + WLIPRM  F  R P +
Sbjct: 65  EAKRYFPHVQAALQTLSSATADLRSQGSRPQTLAINVLPSLTINWLIPRMEQFKSRYPHL 124

Query: 124 QVELNMNYDKVDFSRDNISLAIRSSTIPPPRDAIIRELGAEWIGPVCAPDYLSAMPLVTP 183
            V+L++    VDFS+    +AIRSST   P+     +L  E +  VCAP     +  +  
Sbjct: 125 YVDLSIGDFAVDFSQGRYDIAIRSST-KLPKGVNYIKLMDEDLCLVCAPSLAPKLQCI-- 181

Query: 184 DDLAGAHLLATNTRPEAWRDWAEATGNGGLSLKAQRSF--DHFYLLIQAAACGLGVAVVP 241
           +D+    LL   TRPE W  WAE     GL L  +++F  +HFY+L QAAA G+G A++P
Sbjct: 182 EDINHVTLLKHTTRPELWDYWAEKV---GLVLTQEQTFGVEHFYMLSQAAASGMGAALIP 238

Query: 242 HMLALSELQSGRLVAPFGFTPGARHLKLWISPQA-AIRAELRALEAWLVGEMATF 295
                 +L +G LV PF  T  + ++   ++P++ ++  +++A   W++   A +
Sbjct: 239 RFFIEEQLANGSLVIPFHSTFTSPYVYYLLTPKSPSLPLKVQAFIEWMLDLFAPY 293