Pairwise Alignments

Query, 346 a.a., HTH-type transcriptional repressor CytR from Xanthobacter sp. DMC5

Subject, 332 a.a., transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  154 bits (389), Expect = 3e-42
 Identities = 104/323 (32%), Positives = 158/323 (48%), Gaps = 7/323 (2%)

Query: 1   MNRKARATLQDVAQLAGVSTATVSRALSRPDLVQEETLARVSDAISRLNYVPGGAARALA 60
           M +K RATLQDVA   GV+  TVSR L  PD V   T  +++ A+  L Y+   A   L+
Sbjct: 1   MTKKQRATLQDVADQVGVTKMTVSRYLRSPDSVAAATREKIALAVEALGYIENRAPAMLS 60

Query: 61  SGKTLTIGAVVPTLDHAIFARAIQAMQTELAGNGYQLLVAAHDYAPAQEAAAVRAMLARG 120
              +  IG ++P+L + IFA  +Q ++     NGY+ L+A   Y   +E   + ++LA  
Sbjct: 61  KSSSKAIGILLPSLSNQIFASFVQGIEAVTKANGYETLLAHFGYDEEEEERKIASLLAYQ 120

Query: 121 VDALMVVGADHLEETWALLTTASVPVVLSWSFDARL--PAIGFDNEKAGWLIADHLLDLG 178
           VD L++  + H + T  ++ ++ VPVV +    A     A+G D+ +A +     ++  G
Sbjct: 121 VDGLILTESHHTQRTLQMIASSGVPVVETMELPANPIDMAVGMDHVEASYQAVKKIIAAG 180

Query: 179 HRRFGMISGFTHANDRARSRVAGVRAALAARGLELPSSCV-VEAPFTLAGGRAGLAELMA 237
            R           + R + R+ G   A+   GL +        + F+LA     L E  A
Sbjct: 181 KRSIAYFG--ARLDTRTKLRMQGYDQAMQEAGLPIKHVLTGSHSSFSLAAQL--LDEAFA 236

Query: 238 RATPPTAVVCGNDLLAAGALFEAQASGIAVPGALSVVGIDNLEIAAHLAPPLTTVHLPTT 297
           R      V C ND +A G L  AQ  GI VP  LSV+G + L+I   + P LT+V  P  
Sbjct: 237 RYPDLDGVFCTNDDIAIGTLLVAQQRGIRVPEQLSVIGYNALDIGRTITPKLTSVDSPRY 296

Query: 298 ELGRTVARHLLARLRGEAQPHRV 320
            +G   A  L+A L+GE    +V
Sbjct: 297 AIGEKSAELLIAALKGERAEQQV 319