Pairwise Alignments

Query, 472 a.a., Cytochrome bd-II ubiquinol oxidase subunit 1 from Xanthobacter sp. DMC5

Subject, 479 a.a., cytochrome bd quinol oxidase subunit 1 apoprotein from Pseudomonas syringae pv. syringae B728a

 Score =  439 bits (1130), Expect = e-128
 Identities = 217/436 (49%), Positives = 298/436 (68%), Gaps = 5/436 (1%)

Query: 1   MDALALSRLQFAFTVGFHILWPTLTIGTAWFVTLLSFLWWRTGKTVYRDLMRFWMRLFAL 60
           ++A+ L+R+QFAFT+ FHIL+P +TIG A ++ +L  LW +T   VYRDL  FW ++FA+
Sbjct: 4   LEAIDLARIQFAFTISFHILFPAITIGLASYLAVLEGLWLKTRDDVYRDLYHFWSKIFAV 63

Query: 61  VFGMGVVSGIVLSYEIGTNWAGFSRSVANVLGPLLAYETMTAFFLEAGFIGIMLFGEARV 120
            FGMGVVSG+V++Y+ GTNW+ FS     V GPLL YE +TAFFLEAGF+G+MLFG  RV
Sbjct: 64  NFGMGVVSGLVMAYQFGTNWSRFSDFAGAVTGPLLTYEVLTAFFLEAGFLGVMLFGWNRV 123

Query: 121 SKATHFFACLMVAGGALISTTWIIASNSWMQTPAG-AVADASGIYHVVDWWQVIFTASFP 179
            +  HFF+ +MVA G LIST WI++SNSWMQTP G  + D   I    DW+ V+F  SFP
Sbjct: 124 GRNLHFFSTVMVAIGTLISTFWILSSNSWMQTPQGFEIIDGRVI--PTDWFAVVFNPSFP 181

Query: 180 YRLAHMVCASFLTCAFVIAGVSAFHMWRGQHVTASRTAFSMALWLALVLAPLQIFIGDLH 239
           YRL HM  A+F+  AF +   +A+H+ RG+   A R   SMA+W+AL++AP+Q  +GD H
Sbjct: 182 YRLTHMAIAAFVATAFFVGSSAAWHLLRGRDTPAVRKMLSMAMWMALLVAPVQAVVGDFH 241

Query: 240 GRNTLVHQPTKLAAMEGLWDTTRGPAMTVIAW--PDMAAQKNLYAVEIPHLASLYLTHSW 297
           G NTL HQP K+AA+EG W+        +I +  PDM  ++  YAVEIP+L SL LTHS 
Sbjct: 242 GLNTLKHQPAKIAAIEGHWENVGDEPTPLILFGIPDMKEERTKYAVEIPYLGSLILTHSL 301

Query: 298 NGEVEGLKAVPPADQPNVPIVFFAFRIMAGIGMVLLATAVTGLVLRLRGRLYNARWFQYL 357
           + +V  LK   P D+PN  IVF++FR+M  +GM+++ T +  L LR RG LYN+R F YL
Sbjct: 302 DKQVPALKEFKPEDRPNSTIVFWSFRVMVALGMLMIFTGLWSLWLRKRGTLYNSRPFLYL 361

Query: 358 AMATTPLGLVAVLAGWTVTEAGRQPWIIYSVLRTADAVAPVTAGAVTTSLIIFFAVYNLL 417
           A+   P GL+A+LAGW  TE GRQPW++Y ++RTADA +  +   ++ +L++F  VY +L
Sbjct: 362 ALWMGPSGLIAILAGWFTTEIGRQPWVVYGLMRTADASSGHSVAQMSITLVLFVVVYFVL 421

Query: 418 LLAFLWFAGRVAFKGP 433
               L +  R+  KGP
Sbjct: 422 FGTGLGYMMRLVRKGP 437