Pairwise Alignments

Query, 751 a.a., Nicotinate dehydrogenase subunit B from Xanthobacter sp. DMC5

Subject, 733 a.a., Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs from Pseudomonas stutzeri RCH2

 Score = 90.1 bits (222), Expect = 4e-22
 Identities = 115/491 (23%), Positives = 180/491 (36%), Gaps = 86/491 (17%)

Query: 201 MDRPVPRVDIPAKVTGGAAYVQDMRLPGMVHGRIVRPPSYGARLVALDAGPVEAMPGVL- 259
           + +P+ RVD P KVTG A Y  +  +PG+++G +V       R+  +DA   EA+PGV  
Sbjct: 8   LGKPLDRVDGPLKVTGKACYAAEAEVPGLLYGAVVSSSIARGRIKGIDAAAAEALPGVRL 67

Query: 260 ----------------------------------KVVRDGAFLGVIAEQEWTAIQAMRRL 285
                                             +V+  G  L ++  +     +    L
Sbjct: 68  VLTHQNRPPVASYDEPYEDDDAADGSPFRPLYNDRVLYSGQPLALVVAETQALARHGASL 127

Query: 286 ATLARWEETAQLPDEARLPEALMALPTRDTPILEVGQPDAPSFT-LDTLFSRPYLAHGSI 344
             +    E  Q   +A   +A  A      P  +     A +   +D  +  P   H  +
Sbjct: 128 VHVEYEVEAHQTDLQAAREQAHEAPAELPEPRGDFDSAFAAAAKRIDCEYGTPVEHHNPM 187

Query: 345 GPSCAIA-YLEGDAMTVWTHTQGVYPLRDALAGLLAVPPEKVRCIHAEGAGCYGQNGADD 403
            P  +I  Y  G  + +   TQGV   +  L  +  +   K+R +     G +G      
Sbjct: 188 EPHTSIVQYQPGGELLIHDKTQGVQNCQRYLEQVFDMQG-KIRVLAPFVGGAFGSGLRPQ 246

Query: 404 AGADAAMLARALPGRPVRVQWMREQEHAWEPFGPGMVARVRAALGPDGAISAWQHDVWSQ 463
                A++A       VRV+  R+Q   +  + P    +++ A   +G + A +H    Q
Sbjct: 247 YQLPLAVMAALKLKASVRVELTRQQMFTFG-YRPRTFQQLKLAADGEGRLRAIEHKAIGQ 305

Query: 464 SHMMRPGPPGTLLAARDKAEPFPPAPPVDLPMPEGGGDRNAVPLYVLPNARAVNHFLPDM 523
           +                + E F           E  G      LY   N R      P  
Sbjct: 306 T---------------SRFEDFTEHEV------EWSG-----MLYACDNVRLGYRLAPLD 339

Query: 524 PLRGSSMRSLGGYLNVFAIESTMDELARRAGQDPVDFRLRHLQD-----------ERAKA 572
                 MR+ G  + V+A+E  MDELA   G DP++ RLR+  D           +  +A
Sbjct: 340 VYTPLDMRAPGATIGVYALECAMDELAHEVGIDPLELRLRNYTDINGNEGKRYSSKELRA 399

Query: 573 VITTAAERFGWKDRPKPPSG-------GGYGFAFARYKNLEAYCAIALEIAIDADTGRLL 625
                AERFGW  RP  P          G G A   ++ ++     +    IDAD G+LL
Sbjct: 400 CYQQGAERFGWSRRPAQPRSLRDGHQLVGMGMATGVWEAMQ--MPASARACIDAD-GKLL 456

Query: 626 VTRVVAAVDTG 636
           VT   A + TG
Sbjct: 457 VTSATADIGTG 467



 Score = 63.9 bits (154), Expect = 3e-14
 Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 6/139 (4%)

Query: 608 YCAIALEIAIDADTGRLLVTRVVAAVDTGQVVNPDGVRNQIEGGIVQATSWTLFEGVRFD 667
           + A+ +E+ +D D G + V+RVV+A+  G++VNP    NQI GG+V      L E    D
Sbjct: 594 HSAVFVEVRVDEDLGTIKVSRVVSAIAAGRIVNPKTAGNQIVGGVVWGIGQALHEETLID 653

Query: 668 RR--RITSVDWTAYPILRFSRMPRA----VEVHIIPRPGLPFLGAGEAAQGPMGAALGNA 721
            R  R  + +   Y I   + +P      VE H      L   G GE       AA+ NA
Sbjct: 654 HRLGRYMNHNLAEYHIPVNADIPEIDVIFVEEHDEVVNDLGSKGVGEIGIVGAAAAVANA 713

Query: 722 IRDACGQRLATLPLDASRI 740
           I +A G+R+  LP+   ++
Sbjct: 714 IYNATGKRVRDLPITLDKL 732



 Score = 38.5 bits (88), Expect = 1e-06
 Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 5/82 (6%)

Query: 63  IAPDGTATIFTGKAELGQGIRTALLQVAAEELKLPFSRLDLITADTS--RTSNEGYTAAS 120
           I  DG   + +  A++G G  TA+ Q+AA+ + L  + ++    D+S  +   EG +A  
Sbjct: 449 IDADGKLLVTSATADIGTGTYTAMTQIAADAMGLSMAEVEFRLGDSSLPQAPLEGGSATV 508

Query: 121 HSVQDSGTAIRNAAAQVREILI 142
            SV   G+A++ A A +R+ L+
Sbjct: 509 SSV---GSAVQRACAGLRQKLL 527