Pairwise Alignments

Query, 835 a.a., ATP-dependent RNA helicase HrpB from Xanthobacter sp. DMC5

Subject, 1303 a.a., ATP-dependent RNA helicase HrpA (EC 3.6.4.13) from Pseudomonas fluorescens FW300-N2E2

 Score =  260 bits (665), Expect = 3e-73
 Identities = 164/455 (36%), Positives = 245/455 (53%), Gaps = 24/455 (5%)

Query: 2   FDTKLPIDAVLGDIRSTLASTSCAVLVAPPGAGKTTRVPLALLDEPWAAGGKILVLEPRR 61
           +D  LPI A   +I+  L      ++    G+GKTT++P   L+      G I   +PRR
Sbjct: 68  YDDNLPIAAKRDEIKDALLKHQVLIIAGETGSGKTTQLPKICLEIGRGQHGLIGHTQPRR 127

Query: 62  LAARAAARRMAQTLGEAVGGTVGFRTRLASEVSRRTRIEVVTEGIFTRMVLDDPELSGIA 121
           +AAR+ A R+A+ L   +G  VG++ R   +    T I+++T+GI      +D  L    
Sbjct: 128 IAARSVASRVAEELATPLGALVGYQVRFEDQSDANTLIKLMTDGILLAETQNDRYLERYD 187

Query: 122 AVLFDEFHERSLDADLGLALALDSQRGLRDDLRLLAMSATLDGARVASLMGLGAPAPVIE 181
            ++ DE HERSL+ D  L   L +    R DL+++  SAT+D  R +        AP++E
Sbjct: 188 TIIVDEAHERSLNIDFLLGY-LKTLLPRRPDLKVIITSATIDLERFSKHFD---DAPIVE 243

Query: 182 SEGRAFPVETAY----LGRDP---RTPIDRQMTDAIRRALE----------REDGSILAF 224
             GR FPVET Y    L +D    R   D  +  AI   L+          R  G +L F
Sbjct: 244 VSGRTFPVETWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAYERSERRSPGDVLVF 303

Query: 225 LPGAAEIRRTETLLLDAVRDPKVDVVALFGALDAAEQDRAVLPAPEGRRKVVLATSIAET 284
           LPG  EIR    +L  A +    +++ L+  L  AEQ R     P   R+VVLAT++AET
Sbjct: 304 LPGEREIRDAAEMLRKA-QLKHTEILPLYARLSPAEQQRIFQSHPG--RRVVLATNVAET 360

Query: 285 SLTIEGVRVVVDSGLARVPRFEPDVGLTRLETVRVSRAAADQRRGRAGRTEPGVCYRLWS 344
           SLT+ G+R V+DSG AR+ R+     + RL    +S+A+A+QR+GR GR EPG+C RL+S
Sbjct: 361 SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICVRLYS 420

Query: 345 EGETASLPAFATPEILAADLTGLVLDLARVGVRDPAALPFLDPPPAPAVTEAKALLRLLG 404
           E +    P F  PEIL  +L  ++L +  + + +    PF++PP   A+++   LL+ L 
Sbjct: 421 EEDFLGRPEFTDPEILRTNLAAVILQMLHLRLGEITDFPFIEPPDGKAISDGFNLLQELS 480

Query: 405 ALDADEAVTPLGRLMARLPLPPRLAHMVAIGAARG 439
           A+D +  +TPLGR +ARLP+ PR+  M+   A  G
Sbjct: 481 AVDRNSQLTPLGRQLARLPVDPRMGRMLLEAAKLG 515