Pairwise Alignments

Query, 835 a.a., ATP-dependent RNA helicase HrpB from Xanthobacter sp. DMC5

Subject, 820 a.a., ATP-dependent helicase HrpB from Vibrio cholerae E7946 ATCC 55056

 Score =  533 bits (1373), Expect = e-155
 Identities = 333/832 (40%), Positives = 478/832 (57%), Gaps = 26/832 (3%)

Query: 6   LPIDAVLGDIRSTLASTSCAVLVAPPGAGKTTRVPLALLDEPWAAG--GKILVLEPRRLA 63
           LPI  V+  + S + ++   +L A PGAGK+T  PL LL    A G  GKI++LEPRRLA
Sbjct: 4   LPIIEVMPKLLSGITNSPQLILKAAPGAGKSTYFPLQLLQ---AGGFHGKIIMLEPRRLA 60

Query: 64  ARAAARRMAQTLGEAVGGTVGFRTRLASEVSRRTRIEVVTEGIFTRMVLDDPELSGIAAV 123
           AR  AR +AQ LGE VG  VG+R R  + VSR T++E+VTEGI TRM+ +DPEL G+  +
Sbjct: 61  ARNIARYLAQQLGEEVGQRVGYRVRGENRVSRATQLEIVTEGIMTRMLQNDPELDGVDVL 120

Query: 124 LFDEFHERSLDADLGLALALDSQRGLRDDLRLLAMSATLDGARVASLMGLGAPAPVIESE 183
           +FDEFHERS+ AD  LALAL+ Q  LR+DL+++ MSATLD   + +L+     A  +ES+
Sbjct: 121 IFDEFHERSIHADTALALALEVQSALREDLKIVVMSATLDQQALQNLL---PQASYVESQ 177

Query: 184 GRAFPVETAYLGRDPRTPIDRQMTDAIRRALEREDGSILAFLPGAAEIRRTETLLLDAVR 243
           GR FP+E  Y       P+   M   IR  L+ E GS+LAFLPGAA I +    L D   
Sbjct: 178 GRGFPIEIRYQPLRSDEPLVTAMQRQIRHLLQHETGSLLAFLPGAASINQLTEQLSDLAS 237

Query: 244 DPKVDVVALFGALDAAEQDRAVLPAPEGRRKVVLATSIAETSLTIEGVRVVVDSGLARVP 303
           +  V++  L+G ++ A Q RA+ P   GRRKVVLAT+IAETSLTIEG+R+V+DSGL R  
Sbjct: 238 E--VEICPLYGQMEFAAQQRAIAPTAAGRRKVVLATNIAETSLTIEGIRIVLDSGLERSA 295

Query: 304 RFEPDVGLTRLETVRVSRAAADQRRGRAGRTEPGVCYRLWSEGETASLPAFATPEILAAD 363
           RF+   G+TRLE VR+++++A+QR GRAGR EPG+C RL+SE +    P    PE+L  D
Sbjct: 296 RFDLKTGITRLEQVRIAQSSAEQRAGRAGRLEPGICVRLYSEAQLKQQPWVPEPEMLHTD 355

Query: 364 LTGLVLDLARVGVRDPAALPFLDPPPAPAVTEAKALLRLLGALDADEAVTPLGRLMARLP 423
           L  L L+LA+ G + P+ L +L+ PP+ A  +A+ LL+ LG LDA   +T  G+    L 
Sbjct: 356 LAPLALELAQWGAQ-PSDLAWLNLPPSSAFAQAQQLLQRLGLLDARTQITAAGKEAHLLG 414

Query: 424 LPPRLAHMVAIGAARGVGRLGAEIAALLVERGLGGDSVDLLARLDGFRRDRSRRAEDSRR 483
           + PR+A M+      G   L + +A  ++        +D+   L  +++ R  +    ++
Sbjct: 415 VEPRIAAMLLSADRLGESALQSALALTVLLEEPERQVIDVQHSLHRWQQGRHPK----QK 470

Query: 484 LAGRWAEMAARELAADGRASDTAPPPSPSALLALAFPDRVAKAREGRAGETQMRFLMTNG 543
           L  + A+  A +L      S       P  +  LAFPDR+A+ R  + G+    FL+ NG
Sbjct: 471 LLIQRAQSLAHKLDTAFSLSSVDSAWLP-LVACLAFPDRIAQQRGQQTGQ----FLLANG 525

Query: 544 RGAVLEGTSPLARAPFLAVAEAS-GRAEGARITLAAALSTDEVEALFADDITSGLEVAFD 602
            GA L     L+ A +L   +   G+ + ++I  A  L    +E +    I+   +V +D
Sbjct: 526 HGAWLAVEDRLSAADYLVALDLMRGQTQASQIFSALELDIHALERVLPALISRVEQVDWD 585

Query: 603 PAAMAVRAREVRRLKALVLAARPQPVPADAETARALARGIADADIGRLPFSAASRQWRER 662
             A  + A    R+  LVL     P P   +  +AL   +    +  L +S  + +W  R
Sbjct: 586 EKAGRLSAEAQWRIDQLVLRREKLPEPDKQKMTQALLSYVRRKGLTVLQWSEDASEWLAR 645

Query: 663 VMFLRAAEGEP---WPDLSDAALAASVETWLAPFLSDRTSLADISGADVGNALHALLPYE 719
                AAE  P   WP L D  L A +E WL P+L+  TS+  +    V  AL   L +E
Sbjct: 646 ARC--AAEWLPEEAWPALDDETLLARLELWLEPYLAGVTSVKGLQSVSVLQALKHYLGWE 703

Query: 720 LTARLEAEAPTHFAAPTGSRLAIDYGAEGGPAVEVRVQELFGLTAHPAIAGGRVPLTLAL 779
           L+ +L+   PTH   PTG+   I Y     P + VR+QE+FG  + P +A G   + + L
Sbjct: 704 LSQQLDEWLPTHHLLPTGNHKKIRYQLGMEPTLSVRMQEVFGEQSSPRVAKGTRAVVMEL 763

Query: 780 LSPAHRPIQVTKDLPQFWRGSWRDVRADMRGRYPKHPWPEDPAAAPPTTRAK 831
           LSPA RP+QVT+DL  FW G++++V+ +M+GRYPKH WP+DPA    T++ K
Sbjct: 764 LSPAQRPLQVTRDLASFWAGAYKEVQKEMKGRYPKHVWPDDPANHVATSKTK 815