Pairwise Alignments

Query, 835 a.a., ATP-dependent RNA helicase HrpB from Xanthobacter sp. DMC5

Subject, 1293 a.a., ATP-dependent helicase HrpA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  249 bits (635), Expect = 9e-70
 Identities = 158/439 (35%), Positives = 240/439 (54%), Gaps = 16/439 (3%)

Query: 2   FDTKLPIDAVLGDIRSTLASTSCAVLVAPPGAGKTTRVPLALLDEPWAAGGKILVLEPRR 61
           +   LP+  +  DI   +++    ++    G+GKTT++P   L+    + G I   +PRR
Sbjct: 72  YPDNLPVSGMREDIAKAISANQVVIIAGETGSGKTTQLPKICLELGLGSRGFIGHTQPRR 131

Query: 62  LAARAAARRMAQTLGEAVGGTVGFRTRLASEVSRRTRIEVVTEGIFTRMVLDDPELSGIA 121
           LAAR+ A R+A+ L   +G  VGF+ R A  +   + I+++T+GI    +  D  L    
Sbjct: 132 LAARSVASRVAEELQSPLGEVVGFKVRFADALKSESYIKLMTDGILLAELTSDRYLDQYD 191

Query: 122 AVLFDEFHERSLDADLGLALALDSQRGLRDDLRLLAMSATLDGARVASLMGLGAPAPVIE 181
            ++ DE HERSL+ D  L   L      R DL+++  SAT+D  R +        AP+IE
Sbjct: 192 TIIIDEAHERSLNIDFILGY-LKQILKKRPDLKIIITSATIDVERFSKHFN---NAPIIE 247

Query: 182 SEGRAFPVETAYLGRDPRTPIDRQMTDAIRRALERED----GSILAFLPGAAEIRRT-ET 236
             GR +PVET Y      T  D    + I  A++       G IL F+ G  EIR T E 
Sbjct: 248 VSGRTYPVETRYRPLVQDTEADLDQIEGIFAAVDELVAEGLGDILIFMNGEREIRDTAEQ 307

Query: 237 LLLDAVRDPKVDVVALFGALDAAEQDRAVLPAPEGRRKVVLATSIAETSLTIEGVRVVVD 296
           L     RD   +++ L+  L   EQ + V  +  GRR +VLAT++AETSLT+ G+R V+D
Sbjct: 308 LNRRNYRD--TEILPLYARLSYGEQSK-VFSSHTGRR-IVLATNVAETSLTVPGIRYVID 363

Query: 297 SGLARVPRFEPDVGLTRLETVRVSRAAADQRRGRAGRTEPGVCYRLWSEGETASLPAFAT 356
            G AR+ R+     + RL    +S+A+A+QR+GR GR  PG+C RL+ E +  + PAF  
Sbjct: 364 PGTARISRYSYRTKVQRLPIEPISQASANQRQGRCGRVGPGICIRLYDEADFNNRPAFTD 423

Query: 357 PEILAADLTGLVLDLARVGVRDPAALPFLDPPPAPAVTEAKALLRLLGALDADE---AVT 413
           PEIL  +L  ++L +  +G+ D AA PF++PP    + +   LL  L A+   +    +T
Sbjct: 424 PEILRTNLASVILQMLAIGLGDIAAFPFIEPPDPRHIRDGFLLLEELQAVKQQKGNIVLT 483

Query: 414 PLGRLMARLPLPPRLAHMV 432
           PLGR ++++P+ PRLA MV
Sbjct: 484 PLGRQLSQIPVDPRLARMV 502