Pairwise Alignments

Query, 230 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 210 a.a., Cold-shock DNA-binding domain protein (NCBI) from Rhodospirillum rubrum S1H

 Score =  133 bits (335), Expect = 2e-36
 Identities = 85/217 (39%), Positives = 107/217 (49%), Gaps = 54/217 (24%)

Query: 52  ATVKWFNPEKGFGFVELSDGSGDVFLHARALEAAGQESVPPGSKLSVRVGQGQKGRQVTE 111
           ATVKWFN  KGFGFV +SDG  D FLH   L+ AG   +P G+ +   +  GQKG QV+E
Sbjct: 7   ATVKWFNATKGFGFVRVSDGEPDAFLHISVLQRAGYSELPEGATIVCDLAPGQKGMQVSE 66

Query: 112 VLEVDTSTAEAAPARRSFGDRPGGFGGGG---GGGFGGAPRSG------------GGPRA 156
           + EV+             G  PGGFGGGG   GG  GG  R G            GG   
Sbjct: 67  IYEVE-------------GGSPGGFGGGGYDRGGYSGGFDRGGYNGGFDRGAADRGGYAG 113

Query: 157 AT-------------------------GPTEERVGTVKWYNPEKGFGFIAVEGGGKDVFV 191
           AT                         G TE   G VK+++ +KGFGF+  +GGGKDV+V
Sbjct: 114 ATDRGGYAGGAADRGGYAGGADRGGFQGETEID-GVVKFFSADKGFGFVVPDGGGKDVYV 172

Query: 192 HVTVISRSGLSDLAEGQRVMVQVGQGPKGPEARGIEL 228
               +   G+S L +GQRV + +  G KGP A  +EL
Sbjct: 173 GSRTLQDCGVSVLEQGQRVRMSIRMGKKGPMAGSLEL 209



 Score = 46.6 bits (109), Expect = 4e-10
 Identities = 21/57 (36%), Positives = 34/57 (59%)

Query: 50  IDATVKWFNPEKGFGFVELSDGSGDVFLHARALEAAGQESVPPGSKLSVRVGQGQKG 106
           ID  VK+F+ +KGFGFV    G  DV++ +R L+  G   +  G ++ + +  G+KG
Sbjct: 145 IDGVVKFFSADKGFGFVVPDGGGKDVYVGSRTLQDCGVSVLEQGQRVRMSIRMGKKG 201