Pairwise Alignments

Query, 291 a.a., Spermidine/putrescine transport system permease protein PotB from Xanthobacter sp. DMC5

Subject, 301 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Shewanella loihica PV-4

 Score =  147 bits (371), Expect = 3e-40
 Identities = 84/262 (32%), Positives = 139/262 (53%), Gaps = 1/262 (0%)

Query: 25  LPIAVVNAIGFLWPVVNLLKMSFREAQASGALGAGYNLDTWTNALTDSFTLELITNSVGV 84
           LP A+V  I    P V +         A  +L    NL  +     D   +     S+ +
Sbjct: 30  LPFAIVLKISLSTPAVAIPPYEALYQYADESLQIMLNLGNYILIFEDHLYINAYLGSLKM 89

Query: 85  SLLITVLTLIASYPIALYLHRSTGTWRTMLMVLVVAPLLTSAVVRTYGWIAILSDRGLVA 144
           + + T+  L+  YP+A  + R+    +T+L++LV+ P  TS ++R Y W+ ILS+ G++ 
Sbjct: 90  ACVTTIGCLLIGYPMAYAIARAPKQHQTVLILLVMLPSWTSFLIRVYAWMGILSNNGVIN 149

Query: 145 NALMALGMAEPPRLMFNLT-GVVIGLTEILMPYMILALLSGFGRLDPRLEEAALTLGASP 203
           N LM LG+   P  M N    V IG+    +P+MIL L +   +LD  L EAA  LG+  
Sbjct: 150 NLLMWLGVISEPIQMLNTNFAVYIGIIYTYLPFMILPLYANLSQLDGSLLEAAADLGSRS 209

Query: 204 LKTFWRVVLPLTAPGMALGGLLCFVLAISSFVTPKLLGGGRVFLLATEIYDQAIVTLNWP 263
           L TFW+V LPL+  G+  G +L F+  +  FV P+LLGG    ++   ++ +     +WP
Sbjct: 210 LNTFWKVTLPLSKGGVIAGSMLVFIPVVGEFVIPELLGGPDSLMIGKVLWQEFFNNRDWP 269

Query: 264 LAAALSMIVLVVFGISLALYAR 285
           +A++L++++L +  I + L+ R
Sbjct: 270 VASSLAIVMLALLIIPITLFHR 291